4.7 Article

dbPAF: an integrative database of protein phosphorylation in animals and fungi

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics

Sean J. Humphrey et al.

NATURE BIOTECHNOLOGY (2015)

Article Biochemical Research Methods

MIMP: predicting the impact of mutations on kinase-substrate phosphorylation

Omar Wagih et al.

NATURE METHODS (2015)

Article Cell Biology

Reconfiguring phosphorylation signaling by genetic polymorphisms affects cancer susceptibility

Yongbo Wang et al.

JOURNAL OF MOLECULAR CELL BIOLOGY (2015)

Article Mathematical & Computational Biology

dbPSP: a curated database for protein phosphorylation sites in prokaryotes

Zhicheng Pan et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2015)

Article Multidisciplinary Sciences

mTORC1-mediated translational elongation limits intestinal tumour initiation and growth

William J. Faller et al.

NATURE (2015)

Article Biochemistry & Molecular Biology

PhosphoSitePlus, 2014: mutations, PTMs and recalibrations

Peter V. Hornbeck et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemistry & Molecular Biology

InParanoid 8: orthology analysis between 273 proteomes, mostly eukaryotic

Erik L. L. Sonnhammer et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Systematic Analysis of the Phosphoproteome and Kinase-substrate Networks in the Mouse Testis

Lin Qi et al.

MOLECULAR & CELLULAR PROTEOMICS (2014)

Letter Biochemical Research Methods

KinomeXplorer: an integrated platform for kinome biology studies

Heiko Horn et al.

NATURE METHODS (2014)

Article Biochemistry & Molecular Biology

EKPD: a hierarchical database of eukaryotic protein kinases and protein phosphatases

Yongbo Wang et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Mathematical & Computational Biology

SysPTM 2.0: an updated systematic resource for post-translational modification

Jing Li et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2014)

Article Mathematical & Computational Biology

dbPPT: a comprehensive database of protein phosphorylation in plants

Han Cheng et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2014)

Article Biochemistry & Molecular Biology

BLAST: a more efficient report with usability improvements

Grzegorz M. Boratyn et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Mathematical & Computational Biology

The PhosphoGRID Saccharomyces cerevisiae protein phosphorylation site database: version 2.0 update

Ivan Sadowski et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2013)

Article Biochemistry & Molecular Biology

Systematic Functional Prioritization of Protein Posttranslational Modifications

Pedro Beltrao et al.

Article Biochemistry & Molecular Biology

The human phosphotyrosine signaling network: Evolution and hotspots of hijacking in cancer

Lei Li et al.

GENOME RESEARCH (2012)

Review Biochemistry & Molecular Biology

Human Protein Reference Database and Human Proteinpedia as resources for phosphoproteome analysis

Renu Goel et al.

MOLECULAR BIOSYSTEMS (2012)

Article Biochemistry & Molecular Biology

Deciphering a global network of functionally associated post-translational modifications

Pablo Minguez et al.

MOLECULAR SYSTEMS BIOLOGY (2012)

Review Biology

Modular evolution of phosphorylation-based signalling systems

Jing Jin et al.

PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)

Article Multidisciplinary Sciences

Quantitative maps of protein phosphorylation sites across 14 different rat organs and tissues

Alicia Lundby et al.

NATURE COMMUNICATIONS (2012)

Article Biochemistry & Molecular Biology

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega

Fabian Sievers et al.

MOLECULAR SYSTEMS BIOLOGY (2011)

Article Biochemistry & Molecular Biology

PHOSIDA 2011: the posttranslational modification database

Florian Gnad et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

Interactive Tree Of Life v2: online annotation and display of phylogenetic trees made easy

Ivica Letunic et al.

NUCLEIC ACIDS RESEARCH (2011)

Review Genetics & Heredity

Kinase mutations in human disease: interpreting genotype-phenotype relationships

Piya Lahiry et al.

NATURE REVIEWS GENETICS (2010)

Article Mathematical & Computational Biology

PhosphoGRID: a database of experimentally verified in vivo protein phosphorylation sites from the budding yeast Saccharomyces cerevisiae

Chris Stark et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2010)

Article Cell Biology

Tyrosine-phosphorylation: thirty years and counting

Tony Hunter

CURRENT OPINION IN CELL BIOLOGY (2009)

Article Biochemical Research Methods

SysPTM: A Systematic Resource for Proteomic Research on Post-translational Modifications

Hong Li et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biochemical Research Methods

GPS 2.0, a tool to predict kinase-specific phosphorylation sites in hierarchy

Yu Xue et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Letter Biotechnology & Applied Microbiology

PhosphoPep-a database of protein phosphorylation sites in model organisms

Bernd Bodenmiller et al.

NATURE BIOTECHNOLOGY (2008)

Article Biochemistry & Molecular Biology

Linear Motif Atlas for Phosphorylation-Dependent Signaling

Martin Lee Miller et al.

SCIENCE SIGNALING (2008)

Article Biochemistry & Molecular Biology

Phospho.ELM: a database of phosphorylation sites - update 2008

Francesca Diella et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

PhosphoPep-a phosphoproteome resource for systems biology research in Drosophila Kc167 cells

Bernd Bodenmiller et al.

MOLECULAR SYSTEMS BIOLOGY (2007)

Correction Cell Biology

Mechanisms of specificity in protein phosphorylation (vol 8, pg 530, 2007)

Jeffrey A. Ubersax et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)

Review Cell Biology

Mechanisms of specificity in protein phosphorylation

Jeffrey A. Ubersax et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2007)

Article Biochemistry & Molecular Biology

Systematic discovery of in vivo phosphorylation networks

Rune Linding et al.

Article Biochemistry & Molecular Biology

Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

Jesper V. Olsen et al.

Review Cell Biology

Reading protein modifications with interaction domains

Bruce T. Seet et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

dbPTM: an information repository of protein post-translational modification

Tzong-Yi Lee et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biotechnology & Applied Microbiology

An iterative statistical approach to the identification of protein phosphorylation motifs from large-scale data sets

D Schwartz et al.

NATURE BIOTECHNOLOGY (2005)

Article Biochemistry & Molecular Biology

The importance of intrinsic disorder for protein phosphorylation

LM Iakoucheva et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

Phosphosite: A bioinformatics resource dedicated to physiological protein phosphorylation

PV Hornbeck et al.

PROTEOMICS (2004)