相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。From deep TLS validation to ensembles of atomic models built from elemental motions
Alexandre Urzhumtsev et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2015)
Discovery and Characterization of Gut Microbiota Decarboxylases that Can Produce the Neurotransmitter Tryptamine
Brianna B. Williams et al.
CELL HOST & MICROBE (2014)
Protein structural ensembles are revealed by redefining X-ray electron density noise
P. Therese Lang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering
Michael E. Wall et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Diffuse X-Ray Scattering to Model Protein Motions
Michael E. Wall et al.
STRUCTURE (2014)
X-ray refinement significantly underestimates the level of microscopic heterogeneity in biomolecular crystals
Antonija Kuzmanic et al.
NATURE COMMUNICATIONS (2014)
Analyzing diffuse scattering with supercomputers
T. M. Michels-Clark et al.
JOURNAL OF APPLIED CRYSTALLOGRAPHY (2013)
PIM: Phase Integrated Method for Normal Mode Analysis of Biomolecules in a Crystalline Environment
Mingyang Lu et al.
JOURNAL OF MOLECULAR BIOLOGY (2013)
Peptide Crystal Simulations Reveal Hidden Dynamics
Pawel A. Janowski et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2013)
Visualizing networks of mobility in proteins
Mark A. Wilson
NATURE METHODS (2013)
Automated identification of functional dynamic contact networks from X-ray crystallography
Henry van den Bedem et al.
NATURE METHODS (2013)
TLS from fundamentals to practice
Alexandre Urzhumtsev et al.
CRYSTALLOGRAPHY REVIEWS (2013)
Towards automated crystallographic structure refinement with phenix.refine
Pavel V. Afonine et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2012)
Sassena - X-ray and neutron scattering calculated from molecular dynamics trajectories using massively parallel computers
Benjamin Lindner et al.
COMPUTER PHYSICS COMMUNICATIONS (2012)
Proteasome allostery as a population shift between interchanging conformers
Amy M. Ruschak et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Modelling dynamics in protein crystal structures by ensemble refinement
B. Tom Burnley et al.
ELIFE (2012)
REFMAC5 for the refinement of macromolecular crystal structures
Garib N. Murshudov et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2011)
Mining electron density for functionally relevant protein polysterism in crystal structures
James S. Fraser et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2011)
Dynamics May Significantly Influence the Estimation of Interatomic Distances in Biomolecular X-ray Structures
Antonija Kuzmanic et al.
JOURNAL OF MOLECULAR BIOLOGY (2011)
PHENIX: a comprehensive Python-based system for macromolecular structure solution
Paul D. Adams et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Evaluating Elastic Network Models of Crystalline Biological Molecules with Temperature Factors, Correlated Motions, and Diffuse X-Ray Scattering
Demian Riccardi et al.
BIOPHYSICAL JOURNAL (2010)
Structure of the full-length Shaker potassium channel Kv1.2 by normal-mode-based X-ray crystallographic refinement
Xiaorui Chen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Modeling discrete heterogeneity in X-ray diffraction data by fitting multi-conformers
Henry van den Bedem et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2009)
Hidden alternative structures of proline isomerase essential for catalysis
James S. Fraser et al.
NATURE (2009)
On the Relationship between Diffraction Patterns and Motions in Macromolecular Crystals
Peter B. Moore
STRUCTURE (2009)
Analysis of structural dynamics in the ribosome by TLS crystallographic refinement
Andrei Korostelev et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Ensemble refinement of protein crystal structures: Validation and application
Elena J. Levin et al.
STRUCTURE (2007)
The structure and function of a novel glycerophosphodiesterase from Enterobacter aerogenes
Colin J. Jackson et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Protein dynamics from X-ray crystallography: Anisotropic, global motion in diffuse scattering patterns
Lars Meinhold et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
The purification, crystallization and preliminary diffraction of a glycerophosphodiesterase from Enterobacter aerogenes
Colin J. Jackson et al.
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2006)
Optimal description of a protein structure in terms of multiple groups undergoing TLS motion
J Painter et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2006)
Correlated dynamics determining X-ray diffuse scattering from a crystalline protein revealed by molecular dynamics simulation
L Meinhold et al.
PHYSICAL REVIEW LETTERS (2005)
A molecular viewer for the analysis of TLS rigid-body motion in macromolecules
J Painter et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2005)
Exploring the structural dynamics of the E-coli chaperonin GroEL using translation-libration-screw crystallographic refinement of intermediate states
C Chaudhry et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
Coot:: model-building tools for molecular graphics
P Emsley et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2004)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Charge-coupled device area x-ray detectors
SM Gruner et al.
REVIEW OF SCIENTIFIC INSTRUMENTS (2002)
Use of TLS parameters to model anisotropic displacements in macromolecular refinement
MD Winn et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2001)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
