相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。NextGenMap: fast and accurate read mapping in highly polymorphic genomes
Fritz J. Sedlazeck et al.
BIOINFORMATICS (2013)
The major quantitative trait locus for mungbean yellow mosaic Indian virus resistance is tightly linked in repulsion phase to the major bruchid resistance locus in a cross between mungbean [Vigna radiata (L.) Wilczek] and its wild relative Vigna radiata ssp sublobata
Huei-Mei Chen et al.
EUPHYTICA (2013)
Polyploidy and its effect on evolutionary success: old questions revisited with new tools
A. Madlung
HEREDITY (2013)
Draft genome sequence of chickpea (Cicer arietinum) provides a resource for trait improvement
Rajeev K. Varshney et al.
NATURE BIOTECHNOLOGY (2013)
How important are transposons for plant evolution?
Damon Lisch
NATURE REVIEWS GENETICS (2013)
Rfam 11.0: 10 years of RNA families
Sarah W. Burge et al.
NUCLEIC ACIDS RESEARCH (2013)
Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
Rajeev K. Varshney et al.
NATURE BIOTECHNOLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Reorganizing the protein space at the Universal Protein Resource (UniProt)
Rolf Apweiler et al.
NUCLEIC ACIDS RESEARCH (2012)
MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity
Yupeng Wang et al.
NUCLEIC ACIDS RESEARCH (2012)
Construction of a Genetic Linkage Map and Genetic Analysis of Domestication Related Traits in Mungbean (Vigna radiata)
Takehisa Isemura et al.
PLOS ONE (2012)
Molecular phylogeny of the subgenus Ceratotropis (genus Vigna, Leguminosae) reveals three eco-geographical groups and Late Pliocene-Pleistocene diversification: evidence from four plastid DNA region sequences
Firouzeh Javadi et al.
ANNALS OF BOTANY (2011)
Overcoming chronic malnutrition in a future warming world: the key importance of mungbean and vegetable soybean
J. D. H. Keatinge et al.
EUPHYTICA (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
The Gypsy Database (GyDB) of mobile genetic elements: release 2.0
Carlos Llorens et al.
NUCLEIC ACIDS RESEARCH (2011)
A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species
Robert J. Elshire et al.
PLOS ONE (2011)
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
Sante Gnerre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity
Daniel Lang et al.
GENOME BIOLOGY AND EVOLUTION (2010)
Bayesian Inference of Species Trees from Multilocus Data
Joseph Heled et al.
MOLECULAR BIOLOGY AND EVOLUTION (2010)
Genome sequence of the palaeopolyploid soybean
Jeremy Schmutz et al.
NATURE (2010)
Dating the origins of polyploidy events
Jeff J. Doyle et al.
NEW PHYTOLOGIST (2010)
Whole-genome sequencing and intensive analysis of the undomesticated soybean (Glycine soja Sieb. and Zucc.) genome
Moon Young Kim et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0
Stephane Guindon et al.
SYSTEMATIC BIOLOGY (2010)
Genetic perspectives on crop domestication
Briana L. Gross et al.
TRENDS IN PLANT SCIENCE (2010)
Bias in Plant Gene Content Following Different Sorts of Duplication: Tandem, Whole-Genome, Segmental, or by Transposition
Michael Freeling
ANNUAL REVIEW OF PLANT BIOLOGY (2009)
Infernal 1.0: inference of RNA alignments
Eric P. Nawrocki et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fine-grained annotation and classification of de novo predicted LTR retrotransposons
Sascha Steinbiss et al.
NUCLEIC ACIDS RESEARCH (2009)
Relationships Among Phaseoloid Legumes Based on Sequences from Eight Chloroplast Regions
Sasa Stefanovic et al.
SYSTEMATIC BOTANY (2009)
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons
David Ellinghaus et al.
BMC BIOINFORMATICS (2008)
Sequence variation of four chloroplast non-coding regions among wild, weedy and cultivated Vigna angularis accessions
Ye Tun Tun et al.
BREEDING SCIENCE (2008)
Genome Structure of the Legume, Lotus japonicus
Shusei Sato et al.
DNA RESEARCH (2008)
MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes
Brandi L. Cantarel et al.
GENOME RESEARCH (2008)
Contrasting patterns in crop domestication and domestication rates: Recent archaeobotanical insights from the old world
Dorian Q. Fuller
ANNALS OF BOTANY (2007)
CEGMA: a pipeline to accurately annotate core genes in eukaryotic genornes
Genis Parra et al.
BIOINFORMATICS (2007)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
AUGUSTUS at EGASP: using EST, protein and genomic alignments for improved gene prediction in the human genome
Mario Stanke et al.
GENOME BIOLOGY (2006)
Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary
M Lavin et al.
SYSTEMATIC BIOLOGY (2005)
An algorithm for progressive multiple alignment of sequences with insertions
A Löytynoja et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
InterProScan: protein domains identifier
E Quevillon et al.
NUCLEIC ACIDS RESEARCH (2005)
ProtTest: selection of best-fit models of protein evolution
F Abascal et al.
BIOINFORMATICS (2005)
Widespread paleopolyploidy in model plant species inferred from age distributions of duplicate genes
G Blanc et al.
PLANT CELL (2004)
Mining EST databases to resolve evolutionary events in major crop species
JA Schlueter et al.
GENOME (2004)
Versatile and open software for comparing large genomes
S Kurtz et al.
GENOME BIOLOGY (2004)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Genome-wide analysis of NBS-LRR-encoding genes in Arabidopsis
BC Meyers et al.
PLANT CELL (2003)
Legumes: Importance and constraints to greater use
PH Graham et al.
PLANT PHYSIOLOGY (2003)
Exploiting EST databases for the development and characterization of gene-derived SSR-markers in barley (Hordeum vulgare L.)
T Thiel et al.
THEORETICAL AND APPLIED GENETICS (2003)
The evolutionary fate and consequences of duplicate genes
M Lynch et al.
SCIENCE (2000)
分享论文
