相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Erratum: Classification and quantification of bacteriophage taxa in human gut metagenomes
Alison S Waller et al.
ISME Journal (2014)
GenBank
Dennis A. Benson et al.
NUCLEIC ACIDS RESEARCH (2014)
Degenerate target sites mediate rapid primed CRISPR adaptation
Peter C. Fineran et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Evidence for metaviromic islands in marine phages
Carolina Megumi Mizuno et al.
FRONTIERS IN MICROBIOLOGY (2014)
Abundant SAR11 viruses in the ocean
Yanlin Zhao et al.
NATURE (2013)
Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes
Mads Albertsen et al.
NATURE BIOTECHNOLOGY (2013)
Identification of a Novel Human Papillomavirus by Metagenomic Analysis of Samples from Patients with Febrile Respiratory Illness
John L. Mokili et al.
PLOS ONE (2013)
Rapid evolution of the human gut virome
Samuel Minot et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Gnotobiotic mouse model of phage-bacterial host dynamics in the human gut
Alejandro Reyes et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Bacteriophage adhering to mucus provide a non-host-derived immunity
Jeremy J. Barr et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Gut Microbiota from Twins Discordant for Obesity Modulate Metabolism in Mice
Vanessa K. Ridaura et al.
SCIENCE (2013)
Genome signature-based dissection of human gut metagenomes to extract subliminal viral sequences
Lesley A. Ogilvie et al.
NATURE COMMUNICATIONS (2013)
A Guide to Enterotypes across the Human Body: Meta-Analysis of Microbial Community Structures in Human Microbiome Datasets
Omry Koren et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Reference-independent comparative metagenomics using cross-assembly: crAss
Bas E. Dutilh et al.
BIOINFORMATICS (2012)
Domain enhanced lookup time accelerated BLAST
Grzegorz M. Boratyn et al.
BIOLOGY DIRECT (2012)
Oxygen minimum zones harbour novel viral communities with low diversity
Noriko Cassman et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
CRISPR targeting reveals a reservoir of common phages associated with the human gut microbiome
Adi Stern et al.
GENOME RESEARCH (2012)
A bacterial driver-passenger model for colorectal cancer: beyond the usual suspects
Harold Tjalsma et al.
NATURE REVIEWS MICROBIOLOGY (2012)
PhiSpy: a novel algorithm for finding prophages in bacterial genomes that combines similarity- and composition-based strategies
Sajia Akhter et al.
NUCLEIC ACIDS RESEARCH (2012)
Comparative (Meta)genomic Analysis and Ecological Profiling of Human Gut-Specific Bacteriophage φB124-14
Lesley A. Ogilvie et al.
PLOS ONE (2012)
Hypervariable loci in the human gut virome
Samuel Minot et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Fermentation, Hydrogen, and Sulfur Metabolism in Multiple Uncultivated Bacterial Phyla
Kelly C. Wrighton et al.
SCIENCE (2012)
Metagenomics and future perspectives in virus discovery
John L. Mokili et al.
CURRENT OPINION IN VIROLOGY (2012)
Microbial Co-occurrence Relationships in the Human Microbiome
Karoline Faust et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Artificial Neural Networks Trained to Detect Viral and Phage Structural Proteins
Victor Seguritan et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Diversity and Abundance of Single-Stranded DNA Viruses in Human Feces
Min-Soo Kim et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)
The human gut virome: Inter-individual variation and dynamic response to diet
Samuel Minot et al.
GENOME RESEARCH (2011)
Java web tools for PCR, in silico PCR, and oligonucleotide assembly and analysis
Ruslan Kalendar et al.
GENOMICS (2011)
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Fabian Sievers et al.
MOLECULAR SYSTEMS BIOLOGY (2011)
Enterotypes of the human gut microbiome
Manimozhiyan Arumugam et al.
NATURE (2011)
Statistical structure of host-phage interactions
Cesar O. Flores et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Mining metagenomic data for novel domains: BACON, a new carbohydrate-binding module
Luciane V. Mello et al.
FEBS LETTERS (2010)
A global network of coexisting microbes from environmental and whole-genome sequence data
Samuel Chaffron et al.
GENOME RESEARCH (2010)
Viruses in the faecal microbiota of monozygotic twins and their mothers
Alejandro Reyes et al.
NATURE (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
The Pfam protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2010)
A Catalog of Reference Genomes from the Human Microbiome
Karen E. Nelson et al.
SCIENCE (2010)
Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly
Bas E. Dutilh et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
The NIH Human Microbiome Project
Jane Peterson et al.
GENOME RESEARCH (2009)
Direct Metagenomic Detection of Viral Pathogens in Nasal and Fecal Specimens Using an Unbiased High-Throughput Sequencing Approach
Shota Nakamura et al.
PLOS ONE (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
F. Meyer et al.
BMC BIOINFORMATICS (2008)
Practical and theoretical advances in predicting the function of a protein by its phylogenetic distribution
Philip R. Kensche et al.
JOURNAL OF THE ROYAL SOCIETY INTERFACE (2008)
Conservation of divergent transcription in fungi
Philip R. Kensche et al.
TRENDS IN GENETICS (2008)
Genome sequence of the Bacteroides fragilis phage ATCC 51477-B1
Shawn A. Hawkins et al.
VIROLOGY JOURNAL (2008)
Metagenomic Diagnosis of Bacterial Infections
Shota Nakamura et al.
EMERGING INFECTIOUS DISEASES (2008)
CRISPR provides acquired resistance against viruses in prokaryotes
Rodolphe Barrangou et al.
SCIENCE (2007)
Identifying bacterial genes and endosymbiont DNA with Glimmer
Arthur L. Delcher et al.
BIOINFORMATICS (2007)
Accurate phylogenetic classification of variable-length DNA fragments
Alice Carolyn McHardy et al.
NATURE METHODS (2007)
An obesity-associated gut microbiome with increased capacity for energy harvest
Peter J. Turnbaugh et al.
NATURE (2006)
Ig-like domains on bacteriophages: A tale of promiscuity and deceit
James S. Fraser et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
Metagenomic analysis of the human distal gut microbiome
Steven R. Gill et al.
SCIENCE (2006)
RNA viral community in human feces: Prevalence of plant pathogenic viruses
T Zhang et al.
PLOS BIOLOGY (2006)
The HHpred interactive server for protein homology detection and structure prediction
J Söding et al.
NUCLEIC ACIDS RESEARCH (2005)
PILER: identification and classification of genomic repeats
RC Edgar et al.
BIOINFORMATICS (2005)
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson et al.
NATURE (2004)
GeneWise and genomewise
E Birney et al.
GENOME RESEARCH (2004)
Metagenomic analyses of an uncultured viral community from human feces
M Breitbart et al.
JOURNAL OF BACTERIOLOGY (2003)
Genomic analysis of uncultured marine viral communities
M Breitbart et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)
The Phage Proteomic Tree: a genome-based taxonomy for phage
F Rohwer et al.
JOURNAL OF BACTERIOLOGY (2002)
The HMMTOP transmembrane topology prediction server
GE Tusnády et al.
BIOINFORMATICS (2001)