相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Role of the Gut Microbiome in Vertebrate Evolution
Thomas J. Sharpton
MSYSTEMS (2018)
New roles in hemicellulosic sugar fermentation for the uncultivated Bacteroidetes family BS11
Lindsey M. Solden et al.
ISME JOURNAL (2017)
Unraveling the processes shaping mammalian gut microbiomes over evolutionary time
Mathieu Groussin et al.
NATURE COMMUNICATIONS (2017)
Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets
Alex D. Washburne et al.
PEERJ (2017)
Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information
Albert Barberan et al.
MSPHERE (2017)
Microbial response to simulated global change is phylogenetically conserved and linked with functional potential
Anthony S. Amend et al.
ISME JOURNAL (2016)
Genetic Determinants of the Gut Microbiome in UK Twins
Julia K. Goodrich et al.
CELL HOST & MICROBE (2016)
Insights into human evolution from ancient and contemporary microbiome studies
Stephanie L. Schnorr et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2016)
An integrated metagenomics pipeline for strain profiling reveals novel patterns of bacterial transmission and biogeography
Stephen Nayfach et al.
GENOME RESEARCH (2016)
Captivity humanizes the primate microbiome
Jonathan B. Clayton et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Cospeciation of gut microbiota with hominids
Andrew H. Moeller et al.
SCIENCE (2016)
Phylosymbiosis: Relationships and Functional Effects of Microbial Communities across Host Evolutionary History
Andrew W. Brooks et al.
PLOS BIOLOGY (2016)
Walls talk: Microbial biogeography of homes spanning urbanization
Jean F. Ruiz-Calderon et al.
SCIENCE ADVANCES (2016)
The gut microbiota: a major player in the toxicity of environmental pollutants?
Sandrine P. Claus et al.
NPJ BIOFILMS AND MICROBIOMES (2016)
Genome-scale rates of evolutionary change in bacteria
Sebastian Duchene et al.
MICROBIAL GENOMICS (2016)
Heritable components of the human fecal microbiome are associated with visceral fat
Michelle Beaumont et al.
GENOME BIOLOGY (2016)
Backbones of evolutionary history test biodiversity theory for microbes
James P. O'Dwyer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)
Microbiomes in light of traits: A phylogenetic perspective
Jennifer B. H. Martiny et al.
SCIENCE (2015)
Host genetic variation impacts microbiome composition across human body sites
Ran Blekhman et al.
GENOME BIOLOGY (2015)
Human Genetics Shape the Gut Microbiome
Julia K. Goodrich et al.
CELL (2014)
Gut microbes of mammalian herbivores facilitate intake of plant toxins
Kevin D. Kohl et al.
ECOLOGY LETTERS (2014)
A Phylogenomic View of Ecological Specialization in the Lachnospiraceae, a Family of Digestive Tract-Associated Bacteria
Conor J. Meehan et al.
GENOME BIOLOGY AND EVOLUTION (2014)
Functional Metabolic Map of Faecalibacterium prausnitzii, a Beneficial Human Gut Microbe
Almut Heinken et al.
JOURNAL OF BACTERIOLOGY (2014)
Diet rapidly and reproducibly alters the human gut microbiome
Lawrence A. David et al.
NATURE (2014)
Uniting the classification of cultured and uncultured bacteria and archaea using 16S rRNA gene sequences
Pablo Yarza et al.
NATURE REVIEWS MICROBIOLOGY (2014)
Rapid changes in the gut microbiome during human evolution
Andrew H. Moeller et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki et al.
BIOINFORMATICS (2013)
Beyond classification: gene-family phylogenies from shotgun metagenomic reads enable accurate community analysis
Samantha J. Riesenfeld et al.
BMC GENOMICS (2013)
Faecalibacterium prausnitzii and human intestinal health
S. Miquel et al.
CURRENT OPINION IN MICROBIOLOGY (2013)
Phylogenetic conservatism of functional traits in microorganisms
Adam C. Martiny et al.
ISME JOURNAL (2013)
High-resolution SAR11 ecotype dynamics at the Bermuda Atlantic Time-series Study site by phylogenetic placement of pyrosequences
Kevin L. Vergin et al.
ISME JOURNAL (2013)
Edge Principal Components and Squash Clustering: Using the Special Structure of Phylogenetic Placement Data for Sample Comparison
Frederick A. Matsen et al.
PLOS ONE (2013)
Ecophylogenetics: advances and perspectives
Nicolas Mouquet et al.
BIOLOGICAL REVIEWS (2012)
Beyond the Venn diagram: the hunt for a core microbiome
Ashley Shade et al.
ENVIRONMENTAL MICROBIOLOGY (2012)
Human gut microbiome viewed across age and geography
Tanya Yatsunenko et al.
NATURE (2012)
APPLICATIONS OF NEXT-GENERATION SEQUENCING The human microbiome: at the interface of health and disease
Ilseung Cho et al.
NATURE REVIEWS GENETICS (2012)
Host responses to the human microbiome
Fredrik Baeckhed
NUTRITION REVIEWS (2012)
Interactions Between the Microbiota and the Immune System
Lora V. Hooper et al.
SCIENCE (2012)
Chimpanzees and humans harbour compositionally similar gut enterotypes
Andrew H. Moeller et al.
NATURE COMMUNICATIONS (2012)
Phylogenetic Diversity Theory Sheds Light on the Structure of Microbial Communities
James P. O'Dwyer et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
UniFrac: an effective distance metric for microbial community comparison
Catherine Lozupone et al.
ISME JOURNAL (2011)
Diet Drives Convergence in Gut Microbiome Functions Across Mammalian Phylogeny and Within Humans
Brian D. Muegge et al.
SCIENCE (2011)
PhylOTU: A High-Throughput Procedure Quantifies Microbial Community Diversity and Resolves Novel Taxa from Metagenomic Data
Thomas J. Sharpton et al.
PLOS COMPUTATIONAL BIOLOGY (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
The ecological coherence of high bacterial taxonomic ranks
Laurent Philippot et al.
NATURE REVIEWS MICROBIOLOGY (2010)
FastTree 2-Approximately Maximum-Likelihood Trees for Large Alignments
Morgan N. Price et al.
PLOS ONE (2010)
The 10k Trees Website: A New Online Resource for Primate Phylogeny
Christian Arnold et al.
EVOLUTIONARY ANTHROPOLOGY (2010)
Inferring clocks when lacking rocks: the variable rates of molecular evolution in bacteria
Chih-Horng Kuo et al.
BIOLOGY DIRECT (2009)
Polysaccharide utilization by gut bacteria: potential for new insights from genomic analysis
Harry J. Flint et al.
NATURE REVIEWS MICROBIOLOGY (2008)
The convergence of carbohydrate active gene repertoires in human gut microbes
Catherine A. Lozupone et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Evolution of mammals and their gut microbes
Ruth E. Ley et al.
SCIENCE (2008)
Oxalobacter formigenes and its role in oxalate metabolism in the human gut
CS Stewart et al.
FEMS MICROBIOLOGY LETTERS (2004)
Phylogenetic approaches for describing and comparing the diversity of microbial communities
AP Martin
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
A statistical test for host-parasite coevolution
P Legendre et al.
SYSTEMATIC BIOLOGY (2002)