4.7 Article

TAL effectors and activation of predicted host targets distinguish Asian from African strains of the rice pathogen Xanthomonas oryzae pv. oryzicola while strict conservation suggests universal importance of five TAL effectors

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Improved specificity of TALE-based genome editing using an expanded RVD repertoire

Jeffrey C. Miller et al.

NATURE METHODS (2015)

Article Biotechnology & Applied Microbiology

Genetic engineering of the Xa10 promoter for broad-spectrum and durable resistance to Xanthomonas oryzae pv. oryzae

Xuan Zeng et al.

PLANT BIOTECHNOLOGY JOURNAL (2015)

Article Biochemical Research Methods

HTSeq-a Python framework to work with high-throughput sequencing data

Simon Anders et al.

BIOINFORMATICS (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Letter Cell Biology

Complete decoding of TAL effectors for DNA recognition

Junjiao Yang et al.

CELL RESEARCH (2014)

Review Plant Sciences

TAL effectors - pathogen strategies and plant resistance engineering

Jens Boch et al.

NEW PHYTOLOGIST (2014)

Article Biochemistry & Molecular Biology

The SEED and the Rapid Annotation of microbial genomes using Subsystems Technology (RAST)

Ross Overbeek et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Biochemistry & Molecular Biology

Modes of TAL effector-mediated repression

Jeannette Werner et al.

NUCLEIC ACIDS RESEARCH (2014)

Review Plant Sciences

From dead leaf, to new life: TAL effectors as tools for synthetic biology

Orlando de lange et al.

PLANT JOURNAL (2014)

Article Multidisciplinary Sciences

Lateral organ boundaries 1 is a disease susceptibility gene for citrus bacterial canker disease

Yang Hu et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)

Article Multidisciplinary Sciences

A TAL effector repeat architecture for frameshift binding

Annekatrin Richter et al.

NATURE COMMUNICATIONS (2014)

Article Chemistry, Multidisciplinary

Artificial repressors for controlling gene expression in bacteria

Mark C. Politz et al.

CHEMICAL COMMUNICATIONS (2013)

Article Biochemistry & Molecular Biology

TAL effectors: function, structure, engineering and applications

Amanda Nga-Sze Mak et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2013)

Article Biochemistry & Molecular Biology

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

Koichiro Tamura et al.

MOLECULAR BIOLOGY AND EVOLUTION (2013)

Article Biochemical Research Methods

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

Chen-Shan Chin et al.

NATURE METHODS (2013)

Article Biotechnology & Applied Microbiology

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

Daehwan Kim et al.

GENOME BIOLOGY (2013)

Letter Biotechnology & Applied Microbiology

High-efficiency TALEN-based gene editing produces disease-resistant rice

Ting Li et al.

NATURE BIOTECHNOLOGY (2012)

Letter Biochemical Research Methods

jModelTest 2: more models, new heuristics and parallel computing

Diego Darriba et al.

NATURE METHODS (2012)

Article Biochemistry & Molecular Biology

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction

Erin L. Doyle et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Multidisciplinary Sciences

Structural Basis for Sequence-Specific Recognition of DNA by TAL Effectors

Dong Deng et al.

SCIENCE (2012)

Article Biochemistry & Molecular Biology

Detecting Differential Expression in RNA-sequence Data Using Quasi-likelihood with Shrunken Dispersion Estimates

Steven P. Lund et al.

STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY (2012)

Article Mathematical & Computational Biology

How do alignment programs perform on sequencing data with varying qualities and from repetitive regions?

Xiaoqing Yu et al.

BIODATA MINING (2012)

Article Biochemical Research Methods

Identification of novel transcripts in annotated genomes using RNA-Seq

Adam Roberts et al.

BIOINFORMATICS (2011)

Review Plant Sciences

Xanthomonas AvrBs3 Family-Type III Effectors: Discovery and Function

Jens Boch et al.

ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 48 (2010)

Article Biochemical Research Methods

BRAT: bisulfite-treated reads analysis tool

Elena Y. Harris et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Datamonkey 2010: a suite of phylogenetic analysis tools for evolutionary biology

Wayne Delport et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments

James H. Bullard et al.

BMC BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Rapid and Efficient Protocols for Throughput Extraction of High Quality Plasmid DNA from Strains of Xanthomonas axonopodis pv malvacearum and Escherichia coli

P. K. Chakrabarty et al.

JOURNAL OF PLANT BIOCHEMISTRY AND BIOTECHNOLOGY (2010)

Article Multidisciplinary Sciences

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

Aaron E. Darling et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Real-Time DNA Sequencing from Single Polymerase Molecules

John Eid et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors

Jens Boch et al.

SCIENCE (2009)

Article Multidisciplinary Sciences

A Simple Cipher Governs DNA Recognition by TAL Effectors

Matthew J. Moscou et al.

SCIENCE (2009)

Article Biotechnology & Applied Microbiology

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

Steven L. Salzberg et al.

BMC GENOMICS (2008)

Article Biotechnology & Applied Microbiology

The RAST server: Rapid annotations using subsystems technology

Ramy K. Aziz et al.

BMC GENOMICS (2008)

Article Biotechnology & Applied Microbiology

A simple, fast, and accurate method of phylogenomic inference

Martin Wu et al.

GENOME BIOLOGY (2008)

Article Biochemical Research Methods

Choosing BLAST options for better detection of orthologs as reciprocal best hits

Gabriel Moreno-Hagelsieb et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Molecular and pathotypic characterization of new Xanthomonas oryzae strains from West Africa

Carolina Gonzalez et al.

MOLECULAR PLANT-MICROBE INTERACTIONS (2007)

Article Biochemical Research Methods

GARD: a genetic algorithm for recombination detection

Sergei L. Kosakovsky Pond et al.

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Automated phylogenetic detection of recombination using a genetic algorithm

Sergei L. Kosakovsky Pond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2006)

Article Multidisciplinary Sciences

Os8N3 is a host disease-susceptibility gene for bacterial blight of rice

Bing Yang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Review Plant Sciences

Xanthomonas oryzae pathovars: model pathogens of a model crop

David O. Nino-Liu et al.

MOLECULAR PLANT PATHOLOGY (2006)

Article Biochemical Research Methods

Datamonkey: rapid detection of selective pressure on individual sites of codon alignments

SLK Pond et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

The genome sequence of Xanthomonas oryzae pathovar oryzae KACC10331, the bacterial blight pathogen of rice

BM Lee et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemical Research Methods

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing

HA Schmidt et al.

BIOINFORMATICS (2002)

Article Evolutionary Biology

Likelihood-based tests of topologies in phylogenetics

N Goldman et al.

SYSTEMATIC BIOLOGY (2000)