相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Genome, Transcriptome, and Functional Analyses of Penicillium expansum Provide New Insights Into Secondary Metabolism and Pathogenicity
Ana-Rosa Ballester et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2015)
STRING v10: protein-protein interaction networks, integrated over the tree of life
Damian Szklarczyk et al.
NUCLEIC ACIDS RESEARCH (2015)
Horizontal Gene Transfer in Eukaryotic Plant Pathogens
Darren Soanes et al.
ANNUAL REVIEW OF PHYTOPATHOLOGY, VOL 52 (2014)
RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies
Alexandros Stamatakis
BIOINFORMATICS (2014)
Ecology Drives the Distribution of Specialized Tyrosine Metabolism Modules in Fungi
George H. Greene et al.
GENOME BIOLOGY AND EVOLUTION (2014)
A Pluralistic Account of Homology: Adapting the Models to the Data
Leanne S. Haggerty et al.
MOLECULAR BIOLOGY AND EVOLUTION (2014)
Trajectory and genomic determinants of fungal-pathogen speciation and host adaptation
Xiao Hu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Horizontal transfer of an adaptive chimeric photoreceptor from bryophytes to ferns
Fay-Wei Li et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2014)
Multiple recent horizontal transfers of a large genomic region in cheese making fungi
Kevin Cheeseman et al.
NATURE COMMUNICATIONS (2014)
The Evolution of Fungal Metabolic Pathways
Jennifer H. Wisecaver et al.
PLOS GENETICS (2014)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Birth, death and horizontal transfer of the fumonisin biosynthetic gene cluster during the evolutionary diversification of Fusarium
Robert H. Proctor et al.
MOLECULAR MICROBIOLOGY (2013)
Repeated loss of an anciently horizontally transferred gene cluster in Botrytis
Matthew A. Campbell et al.
MYCOLOGIA (2013)
Inferring ancient divergences requires genes with strong phylogenetic signals
Leonidas Salichos et al.
NATURE (2013)
antiSMASH 2.0-a versatile platform for genome mining of secondary metabolite producers
Kai Blin et al.
NUCLEIC ACIDS RESEARCH (2013)
A Functional Bikaverin Biosynthesis Gene Cluster in Rare Strains of Botrytis cinerea Is Positively Controlled by VELVET
Julia Schumacher et al.
PLOS ONE (2013)
Biosynthesis of Antinutritional Alkaloids in Solanaceous Crops Is Mediated by Clustered Genes
M. Itkin et al.
SCIENCE (2013)
Gene Transfer from Bacteria and Archaea Facilitated Evolution of an Extremophilic Eukaryote
Gerald Schoenknecht et al.
SCIENCE (2013)
Inferring duplications, losses, transfers and incomplete lineage sorting with nonbinary species trees
Maureen Stolzer et al.
BIOINFORMATICS (2012)
Genomic characterization of the conditionally dispensable chromosome in Alternaria arborescens provides evidence for horizontal gene transfer
Jinnan Hu et al.
BMC GENOMICS (2012)
Horizontal Transfer and Death of a Fungal Secondary Metabolic Gene Cluster
Matthew A. Campbell et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Recurrent Horizontal Transfer of Bacterial Toxin Genes to Eukaryotes
Yehu Moran et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
Gain and loss of multiple functionally related, horizontally transferred genes in the reduced genomes of two microsporidian parasites
Jean-Francois Pombert et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A Papaver somniferum 10-Gene Cluster for Synthesis of the Anticancer Alkaloid Noscapine
Thilo Winzer et al.
SCIENCE (2012)
Widespread impact of horizontal gene transfer on plant colonization of land
Jipei Yue et al.
NATURE COMMUNICATIONS (2012)
Biochemical Diversification through Foreign Gene Expression in Bdelloid Rotifers
Chiara Boschetti et al.
PLOS GENETICS (2012)
Horizontal Transfer of a Large and Highly Toxic Secondary Metabolic Gene Cluster between Fungi
Jason C. Slot et al.
CURRENT BIOLOGY (2011)
Foreign genes and novel hydrophilic protein genes participate in the desiccation response of the bdelloid rotifer Adineta ricciae
Chiara Boschetti et al.
JOURNAL OF EXPERIMENTAL BIOLOGY (2011)
The Complexity Hypothesis Revisited: Connectivity Rather Than Function Constitutes a Barrier to Horizontal Gene Transfer
Ofir Cohen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Networks of Gene Sharing among 329 Proteobacterial Genomes Reveal Differences in Lateral Gene Transfer Frequency at Different Phylogenetic Depths
Thorsten Kloesges et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Larvicidal activity of metabolites from the endophytic Podospora sp against the malaria vector Anopheles gambiae
Josphat C. Matasyoh et al.
PARASITOLOGY RESEARCH (2011)
Interkingdom Gene Transfer of a Hybrid NPS/PKS from Bacteria to Filamentous Ascomycota
Daniel P. Lawrence et al.
PLOS ONE (2011)
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis
Stephen B. Goodwin et al.
PLOS GENETICS (2011)
Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes
Todd J. Treangen et al.
PLOS GENETICS (2011)
Gene transfer into the fungi
Thomas A. Richards et al.
Fungal Biology Reviews (2011)
Detecting lateral gene transfers by statistical reconciliation of phylogenetic forests
Sophie S. Abby et al.
BMC BIOINFORMATICS (2010)
Phylogenomics reveals subfamilies of fungal nonribosomal peptide synthetases and their evolutionary relationships
Kathryn E. Bushley et al.
BMC EVOLUTIONARY BIOLOGY (2010)
Genes Acquired by Horizontal Transfer Are Potentially Involved in the Evolution of Phytopathogenicity in Moniliophthora perniciosa and Moniliophthora roreri, Two of the Major Pathogens of Cacao
Ricardo Augusto Tiburcio et al.
JOURNAL OF MOLECULAR EVOLUTION (2010)
Comparative genomics reveals mobile pathogenicity chromosomes in Fusarium
Li-Jun Ma et al.
NATURE (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Multiple GAL pathway gene clusters evolved independently and by different mechanisms in fungi
Jason C. Slot et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Multiple lateral gene transfers and duplications have promoted plant parasitism ability in nematodes
Etienne G. J. Danchin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
Lateral Transfer of Genes from Fungi Underlies Carotenoid Production in Aphids
Nancy A. Moran et al.
SCIENCE (2010)
Acquisition of prokaryotic genes by fungal genomes
Marina Marcet-Houben et al.
TRENDS IN GENETICS (2010)
Gene Transfer and Diversification of Microbial Eukaryotes
Jan O. Andersson
ANNUAL REVIEW OF MICROBIOLOGY (2009)
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses
Salvador Capella-Gutierrez et al.
BIOINFORMATICS (2009)
Horizontal Chromosome Transfer, a Mechanism for the Evolution and Differentiation of a Plant-Pathogenic Fungus
Yasunori Akagi et al.
EUKARYOTIC CELL (2009)
Phylogenomic Analysis Demonstrates a Pattern of Rare and Ancient Horizontal Gene Transfer between Plants and Fungi
Thomas A. Richards et al.
PLANT CELL (2009)
Ancient Horizontal Gene Transfer from Bacteria Enhances Biosynthetic Capabilities of Fungi
Imke Schmitt et al.
PLOS ONE (2009)
Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
Maite Novo et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum
Marco A. van den Berg et al.
NATURE BIOTECHNOLOGY (2008)
Horizontal gene transfer in eukaryotic evolution
Patrick J. Keeling et al.
NATURE REVIEWS GENETICS (2008)
Lateral Transfer of a Lectin-Like Antifreeze Protein Gene in Fishes
Laurie A. Graham et al.
PLOS ONE (2008)
Modular networks and cumulative impact of lateral transfer in prokaryote genome evolution
Tal Dagan et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Metabolic diversification - Independent assembly of operon-like gene clusters in different plants
Ben Field et al.
SCIENCE (2008)
Massive horizontal gene transfer in bdelloid rotifers
Eugene A. Gladyshev et al.
SCIENCE (2008)
Evidence for horizontal transfer of a secondary metabolite gene cluster between fungi
Nora Khaldi et al.
GENOME BIOLOGY (2008)
The reacquisition of biotin prototrophy in Saccharomyces cerevisiae involved horizontal gene transfer, gene duplication and gene clustering
Charles Hall et al.
GENETICS (2007)
Horizontal Transfer of a Nitrate Assimilation Gene Cluster and Ecological Transitions in Fungi: A Phylogenetic Study
Jason C. Slot et al.
PLOS ONE (2007)
Origin and distribution of epipolythiodioxopiperazine (ETP) gene clusters in filamentous ascomycetes
Nicola J. Patron et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes
Julie C. Dunning Hotopp et al.
SCIENCE (2007)
Gene duplication, modularity and adaptation in the evolution of the aflatoxin gene cluster
Ignazio Carbone et al.
BMC EVOLUTIONARY BIOLOGY (2007)
Horizontal gene transfer from Bacteria to rumen Ciliates indicates adaptation to their anaerobic, carbohydrates-rich environment
G Ricard et al.
BMC GENOMICS (2006)
Fungal secondary metabolism - From biochemistry to genomics
NP Keller et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Birth of a metabolic gene cluster in yeast by adaptive gene relocation
S Wong et al.
NATURE GENETICS (2005)
Contribution of horizontal gene transfer to the evolution of Saccharomyces cerevisiae
C Hall et al.
EUKARYOTIC CELL (2005)
The genome of the protist parasite Entamoeba histolytica
B Loftus et al.
NATURE (2005)
A functional screen identifies lateral transfer of β-glucuronidase (gus) from bacteria to fungi
P Wenzl et al.
MOLECULAR BIOLOGY AND EVOLUTION (2005)
Horizontal gene transfer, genome innovation and evolution
JP Gogarten et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Horizontal gene transfer promoted evolution of the ability to propagate under anaerobic conditions in yeasts
Z Gojkovic et al.
MOLECULAR GENETICS AND GENOMICS (2004)
The evolutionary dynamics of eukaryotic gene order
LD Hurst et al.
NATURE REVIEWS GENETICS (2004)
Parallel inactivation of multiple GAL pathway genes and ecological diversification in yeasts
CT Hittinger et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
A putative polyketide synthase peptide synthetase from Magnaporthe grisea signals pathogen attack to resistant rice
HU Böhnert et al.
PLANT CELL (2004)
An analysis of the phylogenetic distribution of the pea pathogenicity genes of Nectria haematococca MPVI supports the hypothesis of their origin by horizontal transfer and uncovers a potentially new pathogen of garden pea:: Neocosmospora boniensis
ED Temporini et al.
CURRENT GENETICS (2004)
Biased biological functions of horizontally transferred genes in prokaryotic genomes
Y Nakamura et al.
NATURE GENETICS (2004)
A gene cluster for secondary metabolism in oat: Implications for the evolution of metabolic diversity in plants
X Qi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Molecular evidence on plant divergence times
MJ Sanderson et al.
AMERICAN JOURNAL OF BOTANY (2004)
Phylogenomic analysis of type I polyketide synthase genes in pathogenic and saprobic ascomycetes
S Kroken et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
Genome-scale approaches to resolving incongruence in molecular phylogenies
A Rokas et al.
NATURE (2003)
Horizontal gene transfer accelerates genome innovation and evolution
R Jain et al.
MOLECULAR BIOLOGY AND EVOLUTION (2003)
Characterisation and expression analysis of a nitrate transporter and nitrite reductase genes, two members of a gene cluster for nitrate assimilation from the symbiotic basidiomycete Hebeloma cylindrosporum
P Jargeat et al.
CURRENT GENETICS (2003)
Genomic gene clustering analysis of pathways in eukaryotes
JM Lee et al.
GENOME RESEARCH (2003)
Phylogenetic analyses of diplomonad genes reveal frequent lateral gene transfers affecting eukaryotes
JO Andersson et al.
CURRENT BIOLOGY (2003)
An approximately unbiased test of phylogenetic tree selection
H Shimodaira
SYSTEMATIC BIOLOGY (2002)
CONSEL: for assessing the confidence of phylogenetic tree selection
H Shimodaira et al.
BIOINFORMATICS (2001)
Genes determining pathogenicity to pea are clustered on a supernumerary chromosome in the fungal plant pathogen Nectria haematococca
YN Han et al.
PLANT JOURNAL (2001)
Horizontal gene transfer in prokaryotes: Quantification and classification
EV Koonin et al.
ANNUAL REVIEW OF MICROBIOLOGY (2001)
Lateral gene transfer and the nature of bacterial innovation
H Ochman et al.
NATURE (2000)
NOTUNG: A program for dating gene duplications and optimizing gene family trees
K Chen et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2000)
Horizontal gene transfer of glycosyl hydrolases of the rumen fungi
S Garcia-Vallve et al.
MOLECULAR BIOLOGY AND EVOLUTION (2000)