4.6 Article

Metagenomic sequencing of marine periphyton: taxonomic and functional insights into biofilm communities

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemistry & Molecular Biology

Marine Microbial Metagenomics: From Individual to the Environment

Ching-Hung Tseng et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2014)

Article Biotechnology & Applied Microbiology

Optimal colonization and growth of marine benthic diatoms on artificial substrata: protocol for a routine use in bioindication

Catherine Desrosiers et al.

JOURNAL OF APPLIED PHYCOLOGY (2014)

Article Biochemistry & Molecular Biology

The carbohydrate-active enzymes database (CAZy) in 2013

Vincent Lombard et al.

NUCLEIC ACIDS RESEARCH (2014)

Article Multidisciplinary Sciences

Functional Tradeoffs Underpin Salinity-Driven Divergence in Microbial Community Composition

Chris L. Dupont et al.

PLOS ONE (2014)

Article Biochemical Research Methods

FANTOM: Functional and taxonomic analysis of metagenomes

Kemal Sanli et al.

BMC BIOINFORMATICS (2013)

Review Microbiology

Lineage specific gene family enrichment at the microscale in marine systems

Andrew E. Allen et al.

CURRENT OPINION IN MICROBIOLOGY (2013)

Article Biochemistry & Molecular Biology

KEGG for integration and interpretation of large-scale molecular data sets

Minoru Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2012)

Review Geochemistry & Geophysics

Microbial Metagenomics: Beyond the Genome

Jack A. Gilbert et al.

ANNUAL REVIEW OF MARINE SCIENCE, VOL 3 (2011)

Article Biotechnology & Applied Microbiology

BLAST Ring Image Generator (BRIG): simple prokaryote genome comparisons

Nabil-Fareed Alikhan et al.

BMC GENOMICS (2011)

Article Biochemistry & Molecular Biology

Integrative analysis of environmental sequences using MEGAN4

Daniel H. Huson et al.

GENOME RESEARCH (2011)

Article Biochemical Research Methods

Pathway-Based Functional Analysis of Metagenomes

Itai Sharon et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2011)

Article Biotechnology & Applied Microbiology

Microbial diversity in marine biofilms along a water quality gradient on the Great Barrier Reef

Pascal Kriwy et al.

SYSTEMATIC AND APPLIED MICROBIOLOGY (2011)

Article Biochemical Research Methods

Artificial and natural duplicates in pyrosequencing reads of metagenomic data

Beifang Niu et al.

BMC BIOINFORMATICS (2010)

Review Microbiology

The biofilm matrix

Hans-Curt Flemming et al.

NATURE REVIEWS MICROBIOLOGY (2010)

Article Biochemistry & Molecular Biology

The Pfam protein families database

Robert D. Finn et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

FragGeneScan: predicting genes in short and error-prone reads

Mina Rho et al.

NUCLEIC ACIDS RESEARCH (2010)

Review Biotechnology & Applied Microbiology

Marine genomics: at the interface of marine microbial ecology and biodiscovery

Karla B. Heidelberg et al.

MICROBIAL BIOTECHNOLOGY (2010)

Review Biotechnology & Applied Microbiology

Community-Level Analysis of psbA Gene Sequences and Irgarol Tolerance in Marine Periphyton

K. M. Eriksson et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Review Microbiology

Quorum sensing in Pseudomonas aeruginosa biofilms

T. R. de Kievit

ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemistry & Molecular Biology

Circos: An information aesthetic for comparative genomics

Martin Krzywinski et al.

GENOME RESEARCH (2009)

Article Ecology

Use of diatoms to assess agricultural and coal mining impacts on streams and a multiassemblage case study

Nathan J. Smucker et al.

JOURNAL OF THE NORTH AMERICAN BENTHOLOGICAL SOCIETY (2009)

Article Multidisciplinary Sciences

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

Dongying Wu et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

Zarraz May-Ping Lee et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Carbohydrate Metabolism and Carbon Fixation in Roseobacter denitrificans OCh114

Kuo-Hsiang Tang et al.

PLOS ONE (2009)

Review Chemistry, Analytical

The relevance of the community approach linking chemical and biological analyses in pollution assessment

A. Geiszinger et al.

TRAC-TRENDS IN ANALYTICAL CHEMISTRY (2009)

Article Biochemical Research Methods

A Parsimony Approach to Biological Pathway Reconstruction/Inference for Genomes and Metagenomes

Yuzhen Ye et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biology

Microbial biofilms facilitate adhesion in biofouling invertebrates

John D. Zardus et al.

BIOLOGICAL BULLETIN (2008)

Article Biology

How much non-coding DNA do eukaryotes require?

Sebastian E. Ahnert et al.

JOURNAL OF THEORETICAL BIOLOGY (2008)

Review Microbiology

Physiological heterogeneity in biofilms

Philip S. Stewart et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Multidisciplinary Sciences

A collective mechanism for phase variation in biofilms

Nicholas Chia et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Biochemistry & Molecular Biology

SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

Elmar Pruesse et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Ecology

The SWIFT periphyton test for high-capacity assessments of toxicant effects on microalgal community development

Tobias Porsbring et al.

JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY (2007)

Review Biochemical Research Methods

Monitoring the effect of chemicals on biological communities.: The biofilm as an interface

Sergi Sabater et al.

ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2007)

Article Biochemistry & Molecular Biology

UniProt: the Universal Protein knowledgebase

R Apweiler et al.

NUCLEIC ACIDS RESEARCH (2004)

Review Genetics & Heredity

Metagenomics: Genomic analysis of microbial communities

CS Riesenfeld et al.

ANNUAL REVIEW OF GENETICS (2004)

Review Microbiology

Microbial communities in acid mine drainage

BJ Baker et al.

FEMS MICROBIOLOGY ECOLOGY (2003)

Article Biotechnology & Applied Microbiology

The correlation between rDNA copy number and genome size in eukaryotes

CD Prokopowich et al.

GENOME (2003)

Article Biochemistry & Molecular Biology

The TIGRFAMs database of protein families

DH Haft et al.

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

rrndb: the Ribosomal RNA Operon Copy Number Database

JA Klappenbach et al.

NUCLEIC ACIDS RESEARCH (2001)

Article Environmental Sciences

Cost-benefit analysis of the use of TBT: the case for a treatment approach

A Abbott et al.

SCIENCE OF THE TOTAL ENVIRONMENT (2000)

Article Biochemistry & Molecular Biology

KEGG: Kyoto Encyclopedia of Genes and Genomes

M Kanehisa et al.

NUCLEIC ACIDS RESEARCH (2000)