相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Predicting the human epigenome from DNA motifs
John W. Whitaker et al.
NATURE METHODS (2015)
Discovery of directional and nondirectional pioneer transcription factors by modeling DNase profile magnitude and shape
Richard I. Sherwood et al.
NATURE BIOTECHNOLOGY (2014)
JASPAR 2014: an extensively expanded and updated open-access database of transcription factor binding profiles
Anthony Mathelier et al.
NUCLEIC ACIDS RESEARCH (2014)
Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features
Mahmoud Ghandi et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Evaluation of methods for modeling transcription factor sequence specificity
Matthew T. Weirauch et al.
NATURE BIOTECHNOLOGY (2013)
Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position
Jason D. Buenrostro et al.
NATURE METHODS (2013)
Software for Computing and Annotating Genomic Ranges
Michael Lawrence et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
Distinct Lineage Specification Roles for NANOG, OCT4, and SOX2 in Human Embryonic Stem Cells
Zheng Wang et al.
CELL STEM CELL (2012)
Sequence and chromatin determinants of cell-type-specific transcription factor binding
Aaron Arvey et al.
GENOME RESEARCH (2012)
Sequence features and chromatin structure around the genomic regions bound by 119 human transcription factors
Jie Wang et al.
GENOME RESEARCH (2012)
An expansive human regulatory lexicon encoded in transcription factor footprints
Shane Neph et al.
NATURE (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
Topological domains in mammalian genomes identified by analysis of chromatin interactions
Jesse R. Dixon et al.
NATURE (2012)
ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
NATURE METHODS (2012)
DREME: motif discovery in transcription factor ChIP-seq data
Timothy L. Bailey
BIOINFORMATICS (2011)
MEME-ChIP: motif analysis of large DNA datasets
Philip Machanick et al.
BIOINFORMATICS (2011)
Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data
Roger Pique-Regi et al.
GENOME RESEARCH (2011)
Discriminative prediction of mammalian enhancers from DNA sequence
Dongwon Lee et al.
GENOME RESEARCH (2011)
Enhancers: The abundance and function of regulatory sequences beyond promoters
Michael Bulger et al.
DEVELOPMENTAL BIOLOGY (2010)
Regularization Paths for Generalized Linear Models via Coordinate Descent
Jerome Friedman et al.
JOURNAL OF STATISTICAL SOFTWARE (2010)
Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
Sven Heinz et al.
MOLECULAR CELL (2010)
High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions
Phaedra Agius et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Evidence-ranked motif identification
Stoyan Georgiev et al.
GENOME BIOLOGY (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
Daniel E. Newburger et al.
NUCLEIC ACIDS RESEARCH (2009)
POIMs:: positional oligomer importance matrices -: understanding support vector machine-based signal detectors
Soeren Sonnenburg et al.
BIOINFORMATICS (2008)
Model-based Analysis of ChIP-Seq (MACS)
Yong Zhang et al.
GENOME BIOLOGY (2008)
Reciprocal activation of GATA-1 and PU.1 marks initial specification of hematopoietic stem cells into myeloerythroid and myelolymphoid lineages
Yojiro Arinobu et al.
CELL STEM CELL (2007)
Nucleosome positioning signals in genomic DNA
Heather E. Peckham et al.
GENOME RESEARCH (2007)
Improving the Caenorhabditis elegans genome annotation using machine learning
Gunnar Raetsch et al.
PLOS COMPUTATIONAL BIOLOGY (2007)
RASE:: recognition of alternatively spliced exons in C.elegans
G Rätsch et al.
BIOINFORMATICS (2005)
Mismatch string kernels for discriminative protein classification
CS Leslie et al.
BIOINFORMATICS (2004)
Sequence information for the splicing of human Pre-mRNA identified by support vector machine classification
XHF Zhang et al.
GENOME RESEARCH (2003)
An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments
XS Liu et al.
NATURE BIOTECHNOLOGY (2002)
分享论文
