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Almut Heinken et al.
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Jessica R. Sieber et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 66 (2012)
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Tobias Osterlund et al.
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Matthew N. Benedict et al.
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Caroline M. Plugge et al.
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Jan Schellenberger et al.
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Jan Schellenberger et al.
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In situ to in silico and back: elucidating the physiology and ecology of Geobacter spp. using genome-scale modelling
Radhakrishnan Mahadevan et al.
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Petra Worm et al.
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Shiri Freilich et al.
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Aarash Bordbar et al.
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Edwin H. Wintermute et al.
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Nathan E. Lewis et al.
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Nathan E. Lewis et al.
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Nicolai Mueller et al.
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Niels Klitgord et al.
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Syntrophy in anaerobic global carbon cycles
Michael J. McInerney et al.
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Matthew A. Oberhardt et al.
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Alfons J. M. Stams et al.
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Michael J. McInerney et al.
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Yuchen Liu et al.
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Rudolf K. Thauer et al.
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Kim Y. Pisa et al.
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Christopher S. Henry et al.
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Sergey Stolyar et al.
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AJM Stams et al.
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Anne Kuemmel et al.
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Stoichiometric network theory for nonequilibrium biochemical systems
H Qian et al.
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Biochemical evidence for formate transfer in syntrophic propionate-oxidizing cocultures of Syntrophobacter fumaroxidans and Methanospirillum hungatei
FAM de Bok et al.
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DA Beard et al.
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B Schink
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FAM de Bok et al.
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Energetics of syntrophic propionate oxidation in defined batch and chemostat cocultures
JCM Scholten et al.
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KEGG: Kyoto Encyclopedia of Genes and Genomes
M Kanehisa et al.
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