4.6 Article

Sparse Supermatrices for Phylogenetic Inference: Taxonomy, Alignment, Rogue Taxa, and the Phylogeny of Living Turtles

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

GenBank

Dennis A. Benson et al.

NUCLEIC ACIDS RESEARCH (2017)

Article Biochemistry & Molecular Biology

GenBank

Dennis A. Benson et al.

NUCLEIC ACIDS RESEARCH (2013)

Article Evolutionary Biology

Assessing what is needed to resolve a molecular phylogeny: simulations and empirical data from emydid turtles

Phillip Q. Spinks et al.

BMC EVOLUTIONARY BIOLOGY (2009)

Editorial Material Ecology

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

Scott V. Edwards

EVOLUTION (2009)

Article Biochemical Research Methods

DupTree: a program for large-scale phylogenetic analyses using gene tree parsimony

Andre Wehe et al.

BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Developing markers for multilocus phylogenetics in non-model organisms: A test case with turtles

Robert C. Thomson et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)

Article Multidisciplinary Sciences

Broad phylogenomic sampling improves resolution of the animal tree of life

Casey W. Dunn et al.

NATURE (2008)

Article Multidisciplinary Sciences

Rates of molecular evolution are linked to life history in flowering plants

Stephen A. Smith et al.

SCIENCE (2008)

Article Evolutionary Biology

The PhyLoTA browser: Processing GenBank for molecular phylogenetics research

Michael J. Sanderson et al.

SYSTEMATIC BIOLOGY (2008)

Review Plant Sciences

Construction and annotation of large phylogenetic trees

Michael J. Sanderson

AUSTRALIAN SYSTEMATIC BOTANY (2007)

Article Multidisciplinary Sciences

Genomics, biogeography, and the diversification of placental mammals

Derek E. Wildman et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

The delayed rise of present-day mammals

Olaf R. P. Bininda-Emonds et al.

NATURE (2007)

Article Biodiversity Conservation

Recent hybrid origin of three rare Chinese turtles

Bryan L. Stuart et al.

CONSERVATION GENETICS (2007)

Article Biochemistry & Molecular Biology

GenBank

Dennis A. Benson et al.

NUCLEIC ACIDS RESEARCH (2007)

Review Ecology

The supermatrix approach to systematics

Alan de Queiroz et al.

TRENDS IN ECOLOGY & EVOLUTION (2007)

Article Biochemical Research Methods

RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

Alexandros Stamatakis

BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

A molecular phylogeny of tortoises (Testudines: Testudinidae) based on mitochondrial and nuclear genes

Minh Le et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2006)

Article Genetics & Heredity

Discordance of species trees with their most likely gene trees

James H. Degnan et al.

PLOS GENETICS (2006)

Review Computer Science, Interdisciplinary Applications

Missing data and the design of phylogenetic analyses

JJ Wiens

JOURNAL OF BIOMEDICAL INFORMATICS (2006)

Review Evolutionary Biology

Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes

Michelle M. McMahon et al.

SYSTEMATIC BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Molecular phylogenetics and evolution of turtles

JG Krenz et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Identifying optimal incomplete phylogenetic data sets from sequence databases

CH Yan et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2005)

Article Biochemistry & Molecular Biology

Automatic assessment of alignment quality

T Lassmann et al.

NUCLEIC ACIDS RESEARCH (2005)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

Phylogenetic hypotheses for the turtle family Geoemydidae

PQ Spinks et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2004)

Article Biochemistry & Molecular Biology

DIALIGN: multiple DNA and protein sequence alignment at BiBiServ

B Morgenstern

NUCLEIC ACIDS RESEARCH (2004)

Article Multidisciplinary Sciences

Prospects for building the tree of life from large sequence databases

AC Driskell et al.

SCIENCE (2004)

Article Biochemistry & Molecular Biology

Turtle phylogeny: insights from a novel nuclear intron

MK Fujita et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2004)

Article Multidisciplinary Sciences

Genome-scale approaches to resolving incongruence in molecular phylogenies

A Rokas et al.

NATURE (2003)

Article Evolutionary Biology

Performance-based selection of likelihood models for phylogeny estimation

V Minin et al.

SYSTEMATIC BIOLOGY (2003)

Article Biochemical Research Methods

MrBayes 3: Bayesian phylogenetic inference under mixed models

F Ronquist et al.

BIOINFORMATICS (2003)

Review Evolutionary Biology

Ecological diversification and phylogeny of emydid turtles

PR Stephens et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2003)

Article Biochemistry & Molecular Biology

Obtaining maximal concatenated phylogenetic data sets from large sequence databases

MJ Sanderson et al.

MOLECULAR BIOLOGY AND EVOLUTION (2003)

Article Biochemistry & Molecular Biology

Structural and sequence evolution of U17 small nucleolar RNA (snoRNA) and its phylogenetic congruence in chelonians

M Cervelli et al.

JOURNAL OF MOLECULAR EVOLUTION (2003)

Article Biochemistry & Molecular Biology

Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis

J Castresana

MOLECULAR BIOLOGY AND EVOLUTION (2000)