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Chan-Shuo Wu et al.
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Matteo Carrara et al.
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Ya Yang et al.
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Systematic evaluation of spliced alignment programs for RNA-seq data
Par G. Engstrom et al.
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State-of-the-Art Fusion-Finder Algorithms Sensitivity and Specificity
Matteo Carrara et al.
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SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data
Wenlong Jia et al.
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ART: a next-generation sequencing read simulator
Weichun Huang et al.
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Bpipe: a tool for running and managing bioinformatics pipelines
Simon P. Sadedin et al.
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Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels
Marcel H. Schulz et al.
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Chimeras taking shape: Potential functions of proteins encoded by chimeric RNA transcripts
Milana Frenkel-Morgenstern et al.
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GENCODE: The reference human genome annotation for The ENCODE Project
Jennifer Harrow et al.
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An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
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Reanalysis of RNA-Sequencing Data Reveals Several Additional Fusion Genes with Multiple Isoforms
Sara Kangaspeska et al.
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RNA-Seq Mapping and Detection of Gene Fusions with a Suffix Array Algorithm
Onur Sakarya et al.
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FusionMap: detecting fusion genes from next-generation sequencing data at base-pair resolution
Huanying Ge et al.
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Deep RNA sequencing analysis of readthrough gene fusions in human prostate adenocarcinoma and reference samples
Serban Nacu et al.
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Transcriptional consequences of genomic structural aberrations in breast cancer
Koichiro Inaki et al.
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deFuse: An Algorithm for Gene Fusion Discovery in Tumor RNA-Seq Data
Andrew McPherson et al.
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Identification of fusion genes in breast cancer by paired-end RNA-sequencing
Henrik Edgren et al.
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TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
Daehwan Kim et al.
GENOME BIOLOGY (2011)
Apparent Non-Canonical Trans-Splicing Is Generated by Reverse Transcriptase In Vitro
Jonathan Houseley et al.
PLOS ONE (2010)
Short Homologous Sequences Are Strongly Associated with the Generation of Chimeric RNAs in Eukaryotes
Xin Li et al.
JOURNAL OF MOLECULAR EVOLUTION (2009)
Transcriptome sequencing to detect gene fusions in cancer
Christopher A. Maher et al.
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Implications of chimaeric non-co-linear transcripts
Thomas R. Gingeras
NATURE (2009)
Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line
Qi Zhao et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Chimeric transcript discovery by paired-end transcriptome sequencing
Christopher A. Maher et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
Prominent use of distal 5′ transcription start sites and discovery of a large number of additional exons in ENCODE regions
France Denoeud et al.
GENOME RESEARCH (2007)
TICdb:: a collection of gene-mapped translocation breakpoints in cancer
Francisco J. Novo et al.
BMC GENOMICS (2007)
The impact of translocations and gene fusions on cancer causation
Felix Mitelman et al.
NATURE REVIEWS CANCER (2007)
Reverse transcriptase template switching and false alternative transcripts
Julie Cocquet et al.
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