4.7 Article

Ploidy-Seq: inferring mutational chronology by sequencing polyploid tumor subpopulations

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Neurosciences

Mammalian Target of Rapamycin: Its Role in Early Neural Development and in Adult and Aged Brain Function

Carla Garza-Lombo et al.

FRONTIERS IN CELLULAR NEUROSCIENCE (2016)

Article Multidisciplinary Sciences

Clonal evolution in breast cancer revealed by single nucleus genome sequencing

Yong Wang et al.

NATURE (2014)

Article Biochemical Research Methods

PyClone: statistical inference of clonal population structure in cancer

Andrew Roth et al.

NATURE METHODS (2014)

Article Biochemical Research Methods

SciClone: Inferring Clonal Architecture and Tracking the Spatial and Temporal Patterns of Tumor Evolution

Christopher A. Miller et al.

PLOS COMPUTATIONAL BIOLOGY (2014)

Article Biochemical Research Methods

PurBayes: estimating tumor cellularity and subclonality in next-generation sequencing data

Nicholas B. Larson et al.

BIOINFORMATICS (2013)

Article Biochemistry & Molecular Biology

Genome evolution during progression to breast cancer

Daniel E. Newburger et al.

GENOME RESEARCH (2013)

Article Biochemistry & Molecular Biology

From human genome to cancer genome: The first decade

David A. Wheeler et al.

GENOME RESEARCH (2013)

Article Multidisciplinary Sciences

Mutational heterogeneity in cancer and the search for new cancer-associated genes

Michael S. Lawrence et al.

NATURE (2013)

Article Biochemistry & Molecular Biology

The Life History of 21 Breast Cancers

Serena Nik-Zainal et al.

Article Biochemistry & Molecular Biology

Efficient de novo assembly of large genomes using compressed data structures

Jared T. Simpson et al.

GENOME RESEARCH (2012)

Article Biotechnology & Applied Microbiology

The emerging role of ROS-generating NADPH oxidase NOX4 in DNA-damage responses

Urbain Weyemi et al.

MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH (2012)

Article Multidisciplinary Sciences

Sequence analysis of mutations and translocations across breast cancer subtypes

Shantanu Banerji et al.

NATURE (2012)

Editorial Material Biotechnology & Applied Microbiology

ABSOLUTE cancer genomics

Peter Van Loo et al.

NATURE BIOTECHNOLOGY (2012)

Article Biochemical Research Methods

Genome-wide copy number analysis of single cells

Timour Baslan et al.

NATURE PROTOCOLS (2012)

Article Medicine, General & Internal

Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing

Marco Gerlinger et al.

NEW ENGLAND JOURNAL OF MEDICINE (2012)

Article Multidisciplinary Sciences

Detection of ultra-rare mutations by next-generation sequencing

Michael W. Schmitt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

Tumour evolution inferred by single-cell sequencing

Nicholas Navin et al.

NATURE (2011)

Article Biochemical Research Methods

CREST maps somatic structural variation in cancer genomes with base-pair resolution

Jianmin Wang et al.

NATURE METHODS (2011)

Article Biochemistry & Molecular Biology

COSMIC: mining complete cancer genomes in the Catalogue of Somatic Mutations in Cancer

Simon A. Forbes et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Oncology

Triple-Negative Breast Cancer: An Unmet Medical Need

Clifford A. Hudis et al.

ONCOLOGIST (2011)

Article Biochemical Research Methods

Fast and accurate long-read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Inferring tumor progression from genomic heterogeneity

Nicholas Navin et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

Aaron McKenna et al.

GENOME RESEARCH (2010)

Review Oncology

Tracing the tumor lineage

Nicholas E. Navin et al.

MOLECULAR ONCOLOGY (2010)

Letter Biochemical Research Methods

A method and server for predicting damaging missense mutations

Ivan A. Adzhubei et al.

NATURE METHODS (2010)

Review Medicine, General & Internal

Triple-Negative Breast Cancer

William D. Foulkes et al.

NEW ENGLAND JOURNAL OF MEDICINE (2010)

Article Biochemistry & Molecular Biology

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

Kai Wang et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

The Sequence Alignment/Map format and SAMtools

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Fast and accurate short read alignment with Burrows-Wheeler transform

Heng Li et al.

BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Circos: An information aesthetic for comparative genomics

Martin Krzywinski et al.

GENOME RESEARCH (2009)

Review Oncology

Wnt signalling and its impact on development and cancer

Alexandra Klaus et al.

NATURE REVIEWS CANCER (2008)

Review Cell Biology

The many ways of Wnt in cancer

Paul Polakis

CURRENT OPINION IN GENETICS & DEVELOPMENT (2007)

Article Biochemistry & Molecular Biology

FBXO11 promotes the neddylation of p53 and inhibits its transcriptional activity

Wassim M. Abida et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2007)

Review Cell Biology

Upstream and downstream of mTOR

N Hay et al.

GENES & DEVELOPMENT (2004)

Article Biochemistry & Molecular Biology

SIFT: predicting amino acid changes that affect protein function

PC Ng et al.

NUCLEIC ACIDS RESEARCH (2003)

Letter Oncology

Cell fusion: A hidden enemy?

D Duelli et al.

CANCER CELL (2003)