4.6 Article

Probabilistic models and machine learning in structural bioinformatics

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Free energy estimates of all-atom protein structures using generalized belief propagation

Hetunandan Kamisetty et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2008)

Article Multidisciplinary Sciences

The MC-Fold and MC-Sym pipeline infers RNA structure from sequence data

Marc Parisien et al.

NATURE (2008)

Article Multidisciplinary Sciences

A generative, probabilistic model of local protein structure

Wouter Boomsma et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

De novo computational design of retro-aldol enzymes

Lin Jiang et al.

SCIENCE (2008)

Article Biochemical Research Methods

The Poisson Index: a new probabilistic model for proteinligand binding site similarity

J. R. Davies et al.

BIOINFORMATICS (2007)

Article Multidisciplinary Sciences

Automated de novo prediction of native-like RNA tertiary structures

Rhiju Das et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

Bayesian refinement of protein functional site matching

Kanti V. Mardia et al.

BMC BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Learning about protein hydrogen bonding by minimizing contrastive divergence

Alexei A. Podtelezhnikov et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Assessment of CASP7 structure predictions for template free targets

Ralf Jauch et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Chemistry, Multidisciplinary

Application of Bayesian analysis to indirect Fourier transformation in small-angle scattering

Bente Vestergaard et al.

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2006)

Article Biochemical Research Methods

Sampling realistic protein conformations using local structural bias

Thomas Hamelryck et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Article Multidisciplinary Sciences

Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study

G Chikenji et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Article Multidisciplinary Sciences

Weighting of experimental evidence in macromolecular structure determination

M Habeck et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)

Review Multidisciplinary Sciences

Interfaces and the driving force of hydrophobic assembly

D Chandler

NATURE (2005)

Article Multidisciplinary Sciences

Inferential structure determination

W Rieping et al.

SCIENCE (2005)

Article Physics, Fluids & Plasmas

Bayesian inference applied to macromolecular structure determination

M Habeck et al.

PHYSICAL REVIEW E (2005)

Article Biochemistry & Molecular Biology

Development of novel statistical potentials for protein fold recognition

NV Buchete et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)

Article Biochemistry & Molecular Biology

A new pairwise folding potential based on improved decoy generation and side-chain packing

C Loose et al.

PROTEINS-STRUCTURE FUNCTION AND GENETICS (2004)

Article Physics, Fluids & Plasmas

Teaching computers to fold proteins

O Winther et al.

PHYSICAL REVIEW E (2004)

Article Biochemical Research Methods

Liking likelihood

AJ McCoy

ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY (2004)

Article Biochemistry & Molecular Biology

A physical reference state unifies the structure-derived potential of mean force for protein folding and binding

S Liu et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)

Article Multidisciplinary Sciences

Design of a novel globular protein fold with atomic-level accuracy

B Kuhlman et al.

SCIENCE (2003)

Review Physics, Multidisciplinary

Small-angle scattering studies of biological macromolecules in solution

DI Svergun et al.

REPORTS ON PROGRESS IN PHYSICS (2003)

Article Chemistry, Physical

A reversible fragment assembly method for de novo protein structure prediction

G Chikenji et al.

JOURNAL OF CHEMICAL PHYSICS (2003)

Article Multidisciplinary Sciences

Funnel sculpting for in silico assembly of secondary structure elements of proteins

B Fain et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemical Research Methods

HMM sampling and applications to gene finding and alternative splicing

Simon L. Cawley et al.

BIOINFORMATICS (2003)

Review Biochemistry & Molecular Biology

New applications of maximum likelihood and Bayesian statistics in macromolecular crystallography

AJ McCoy

CURRENT OPINION IN STRUCTURAL BIOLOGY (2002)

Review Biochemistry & Molecular Biology

Molecular dynamics simulations of biomolecules

M Karplus et al.

NATURE STRUCTURAL BIOLOGY (2002)

Article Computer Science, Artificial Intelligence

Training products of experts by minimizing contrastive divergence

GE Hinton

NEURAL COMPUTATION (2002)

Review Genetics & Heredity

Non-coding RNA genes and the modern RNA world

SR Eddy

NATURE REVIEWS GENETICS (2001)

Article Computer Science, Information Systems

Factor graphs and the sum-product algorithm

FR Kschischang et al.

IEEE TRANSACTIONS ON INFORMATION THEORY (2001)

Article Biochemical Research Methods

A number of real-space torsion-angle refinement techniques for proteins, nucleic acids, ligands and solvent

TJ Oldfield

ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2001)

Article Chemistry, Multidisciplinary

Bayesian estimation of hyperparameters for indirect Fourier transformation in small-angle scattering

S Hansen

JOURNAL OF APPLIED CRYSTALLOGRAPHY (2000)