相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Argonaute-Bound Small RNAs from Promoter-Proximal RNA Polymerase II
Jesse R. Zamudio et al.
CELL (2014)
Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
Leighton J. Core et al.
NATURE GENETICS (2014)
Imprinted Chromatin around DIRAS3 Regulates Alternative Splicing of GNG12-AS1, a Long Noncoding RNA
Malwina Niemczyk et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2013)
Processing of snoRNAs as a new source of regulatory non-coding RNAs
Marina Falaleeva et al.
BIOESSAYS (2013)
Reproducibility of high-throughput mRNA and small RNA sequencing across laboratories
Peter A. C. 't Hoen et al.
NATURE BIOTECHNOLOGY (2013)
Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality
Evgenia Ntini et al.
NATURE STRUCTURAL & MOLECULAR BIOLOGY (2013)
miRDeep*: an integrated application tool for miRNA identification from RNA sequencing data
Jiyuan An et al.
NUCLEIC ACIDS RESEARCH (2013)
NCBI GEO: archive for functional genomics data sets-update
Tanya Barrett et al.
NUCLEIC ACIDS RESEARCH (2013)
Differential Expression of Long Noncoding RNAs in the Livers of Female B6C3F1 Mice Exposed to the Carcinogen Furan
Leslie Recio et al.
TOXICOLOGICAL SCIENCES (2013)
deepBlockAlign: a tool for aligning RNA-seq profiles of read block patterns
David Langenberger et al.
BIOINFORMATICS (2012)
High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
Natalie W. Breakfield et al.
GENOME RESEARCH (2012)
Ultrashort and progressive 4sU-tagging reveals key characteristics of RNA processing at nucleotide resolution
Lukas Windhager et al.
GENOME RESEARCH (2012)
The GENCODE v7 catalog of human long noncoding RNAs: Analysis of their gene structure, evolution, and expression
Thomas Derrien et al.
GENOME RESEARCH (2012)
Tissue-Specific Alternative Splicing Remodels Protein-Protein Interaction Networks
Jonathan D. Ellis et al.
MOLECULAR CELL (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
The accessible chromatin landscape of the human genome
Robert E. Thurman et al.
NATURE (2012)
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
Michael M. Hoffman et al.
NATURE METHODS (2012)
Human box C/D snoRNA processing conservation across multiple cell types
Michelle S. Scott et al.
NUCLEIC ACIDS RESEARCH (2012)
miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades
Marc R. Friedlaender et al.
NUCLEIC ACIDS RESEARCH (2012)
Extensive terminal and asymmetric processing of small RNAs from rRNAs, snoRNAs, snRNAs, and tRNAs
Zhihua Li et al.
NUCLEIC ACIDS RESEARCH (2012)
Deep annotation of mouse iso-miR and iso-moR variation
Hongjun Zhou et al.
NUCLEIC ACIDS RESEARCH (2012)
Manipulation of PK-M mutually exclusive alternative splicing by antisense oligonucleotides
Zhenxun Wang et al.
OPEN BIOLOGY (2012)
Traces of post-transcriptional RNA modifications in deep sequencing data
Sven Findeiss et al.
BIOLOGICAL CHEMISTRY (2011)
Comprehensive analysis of mammalian miRNA* species and their role in myeloid cells
Florian Kuchenbauer et al.
BLOOD (2011)
Bias detection and correction in RNA-Sequencing data
Wei Zheng et al.
BMC BIOINFORMATICS (2011)
MicroRNA evolution by arm switching
Sam Griffiths-Jones et al.
EMBO REPORTS (2011)
Rfam: Wikipedia, clans and the decimal release
Paul P. Gardner et al.
NUCLEIC ACIDS RESEARCH (2011)
Human box C/D snoRNAs with miRNA like functions: expanding the range of regulatory RNAs
Markus Brameier et al.
NUCLEIC ACIDS RESEARCH (2011)
miRTarBase: a database curates experimentally validated microRNA-target interactions
Sheng-Da Hsu et al.
NUCLEIC ACIDS RESEARCH (2011)
miRBase: integrating microRNA annotation and deep-sequencing data
Ana Kozomara et al.
NUCLEIC ACIDS RESEARCH (2011)
Protocol Dependence of Sequencing-Based Gene Expression Measurements
Tal Raz et al.
PLOS ONE (2011)
Endogenous siRNAs and noncoding RNA-derived small RNAs are expressed in adult mouse hippocampus and are up-regulated in olfactory discrimination training
Neil R. Smalheiser et al.
RNA (2011)
Classification of ncRNAs using position and size information in deep sequencing data
Florian Erhard et al.
BIOINFORMATICS (2010)
Deep sequencing of the small RNA transcriptome of normal and malignant human B cells identifies hundreds of novel microRNAs
Dereje D. Jima et al.
BLOOD (2010)
Identification of novel non-coding RNAs using profiles of short sequence reads from next generation sequencing data
Chol-Hee Jung et al.
BMC GENOMICS (2010)
Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
H. Rosaria Chiang et al.
GENES & DEVELOPMENT (2010)
The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing
Shivendra Kishore et al.
HUMAN MOLECULAR GENETICS (2010)
Small Noncoding RNAs: Biogenesis, Function, and Emerging Significance in Toxicology
Supratim Choudhuri
JOURNAL OF BIOCHEMICAL AND MOLECULAR TOXICOLOGY (2010)
Discovery and characterization of chromatin states for systematic annotation of the human genome
Jason Ernst et al.
NATURE BIOTECHNOLOGY (2010)
Digital Genome-Wide ncRNA Expression, Including SnoRNAs, across 11 Human Tissues Using PolyA-Neutral Amplification
John C. Castle et al.
PLOS ONE (2010)
Human tRNA-derived small RNAs in the global regulation of RNA silencing
Dirk Haussecker et al.
RNA (2010)
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
Jeremy Goecks et al.
GENOME BIOLOGY (2010)
Differential expression analysis for sequence count data
Simon Anders et al.
GENOME BIOLOGY (2010)
Structural profiles of human miRNA families from pairwise clustering
Bogumil Kaczkowski et al.
BIOINFORMATICS (2009)
Evidence for human microRNA-offset RNAs in small RNA sequencing data
David Langenberger et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Patterns of microRNA expression characterize stages of human B-cell differentiation
Jenny Zhang et al.
BLOOD (2009)
MicroRNAs: Target Recognition and Regulatory Functions
David P. Bartel
CELL (2009)
A novel class of small RNAs: tRNA-derived RNA fragments (tRFs)
Yong Sun Lee et al.
GENES & DEVELOPMENT (2009)
Post-transcriptional processing generates a diversity of 5'-modified long and short RNAs
Katalin Fejes-Toth et al.
NATURE (2009)
Tiny RNAs associated with transcription start sites in animals
Ryan J. Taft et al.
NATURE GENETICS (2009)
GtRNAdb: a database of transfer RNA genes detected in genomic sequence
Patricia P. Chan et al.
NUCLEIC ACIDS RESEARCH (2009)
Uncovering Small RNA-Mediated Responses to Phosphate Deficiency in Arabidopsis by Deep Sequencing
Li-Ching Hsieh et al.
PLANT PHYSIOLOGY (2009)
Small RNAs derived from snoRNAs
Ryan J. Taft et al.
RNA (2009)
Filtering of deep sequencing data reveals the existence of abundant Dicer-dependent small RNAs derived from tRNAs
Christian Cole et al.
RNA (2009)
The miR-30 family microRNAs confer epithelial phenotype to human pancreatic cells
Mugdha V. Joglekar et al.
ISLETS (2009)
Fast Mapping of Short Sequences with Mismatches, Insertions and Deletions Using Index Structures
Steve Hoffmann et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Comparative genomics beyond sequence-based alignments: RNA structures in the ENCODE regions
Elfar Torarinsson et al.
GENOME RESEARCH (2008)
RNA-seq: An assessment of technical reproducibility and comparison with gene expression arrays
John C. Marioni et al.
GENOME RESEARCH (2008)
A Human snoRNA with MicroRNA-Like Functions
Christine Ender et al.
MOLECULAR CELL (2008)
Substantial biases in ultra-short read data sets from high-throughput DNA sequencing
Juliane C. Dohm et al.
NUCLEIC ACIDS RESEARCH (2008)
tRNA cleavage is a conserved response to oxidative stress in eukaryotes
Debrah M. Thompson et al.
RNA (2008)
Divergent Transcription from Active Promoters
Amy C. Seila et al.
SCIENCE (2008)
RNA Stability regulates differential expression of the metastasis protein, osteopontin, in hepatocellular cancer
Sirisha Emani et al.
SURGERY (2008)
Snail-induced down-regulation of ΔNp63α acquires invasive phenotype of human squamous cell carcinoma
Koichiro Higashikawa et al.
CANCER RESEARCH (2007)
Tissue-dependent paired expression of miRNAs
Seungil Ro et al.
NUCLEIC ACIDS RESEARCH (2007)
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2007)
The relationship between non-protein-coding DNA and eukaryotic complexity
Ryan J. Taft et al.
BIOESSAYS (2007)
Pvclust: an R package for assessing the uncertainty in hierarchical clustering
R Suzuki et al.
BIOINFORMATICS (2006)
Understanding alternative splicing: Towards a cellular code
AJ Matlin et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)
The UCSC Table Browser data retrieval tool
D Karolchik et al.
NUCLEIC ACIDS RESEARCH (2004)
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
JM Johnson et al.
SCIENCE (2003)
The UCSC Genome Browser Database
D Karolchik et al.
NUCLEIC ACIDS RESEARCH (2003)
The Ensembl genome database project
T Hubbard et al.
NUCLEIC ACIDS RESEARCH (2002)
An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
NC Lau et al.
SCIENCE (2001)