相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。The genomic landscape of Neanderthal ancestry in present-day humans
Sriram Sankararaman et al.
NATURE (2014)
EBSeq: an empirical Bayes hierarchical model for inference in RNA-seq experiments
Ning Leng et al.
BIOINFORMATICS (2013)
Unsupervised genome-wide recognition of local relationship patterns
Neda Zamani et al.
BMC GENOMICS (2013)
Genome-wide evidence for speciation with gene flow in Heliconius butterflies
Simon H. Martin et al.
GENOME RESEARCH (2013)
An extensive candidate gene approach to speciation: diversity, divergence and linkage disequilibrium in candidate pigmentation genes across the European crow hybrid zone
J. W. Poelstra et al.
HEREDITY (2013)
Alternation of clear-cut colour patterns in Corvus crow evolution accords with learning-dependent social selection against unusual-looking conspecifics
Tiziano Londei
IBIS (2013)
The SLC24 gene family of Na+/Ca2+-K+ exchangers: From sight and smell to memory consolidation and skin pigmentation
Paul P. M. Schnetkamp
MOLECULAR ASPECTS OF MEDICINE (2013)
High Levels of Gene Expression Explain the Strong Evolutionary Constraint of Mitochondrial Protein-Coding Genes
Benoit Nabholz et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
MITOS: Improved de novo metazoan mitochondrial genome annotation
Matthias Bernt et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)
On the Power and the Systematic Biases of the Detection of Chromosomal Inversions by Paired-End Genome Sequencing
Jose Ignacio Lucas Lledo et al.
PLOS ONE (2013)
Genomic islands of divergence are not affected by geography of speciation in sunflowers
S. Renaut et al.
NATURE COMMUNICATIONS (2013)
DELLY: structural variant discovery by integrated paired-end and split-read analysis
Tobias Rausch et al.
BIOINFORMATICS (2012)
rehh: an R package to detect footprints of selection in genome-wide SNP data from haplotype structure
Mathieu Gautier et al.
BIOINFORMATICS (2012)
Identification of polymorphic inversions from genotypes
Alejandro Caceres et al.
BMC BIOINFORMATICS (2012)
Brains, tools, innovation and biogeography in crows and ravens
Knud A. Jonsson et al.
BMC EVOLUTIONARY BIOLOGY (2012)
EggLib: processing, analysis and simulation tools for population genetics and genomics
Stephane De Mita et al.
BMC GENETICS (2012)
Sequence-Based Detection and Breakpoint Assembly of Polymorphic Inversions
Russell B. Corbett-Detig et al.
GENETICS (2012)
Ancient Admixture in Human History
Nick Patterson et al.
GENETICS (2012)
Intrachromosomal rearrangements in avian genome evolution: evidence for regions prone to breakpoints
B. M. Skinner et al.
HEREDITY (2012)
The genomic landscape of species divergence in Ficedula flycatchers
Hans Ellegren et al.
NATURE (2012)
Butterfly genome reveals promiscuous exchange of mimicry adaptations among species
Kanchon K. Dasmahapatra et al.
NATURE (2012)
The genomic basis of adaptive evolution in threespine sticklebacks
Felicity C. Jones et al.
NATURE (2012)
Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks
Cole Trapnell et al.
NATURE PROTOCOLS (2012)
SNP Calling, Genotype Calling, and Sample Allele Frequency Estimation from New-Generation Sequencing Data
Rasmus Nielsen et al.
PLOS ONE (2012)
Coalescent patterns for chromosomal inversions in divergent populations
Rafael F. Guerrero et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
The genomics of speciation-with-gene-flow
Jeffrey L. Feder et al.
TRENDS IN GENETICS (2012)
A fast, lock-free approach for efficient parallel counting of occurrences of k-mers
Guillaume Marcais et al.
BIOINFORMATICS (2011)
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Bo Li et al.
BMC BIOINFORMATICS (2011)
Hematopoietic Prostaglandin D Synthase (H-Pgds) Is Expressed in the Early Embryonic Gonad and Participates to the Initial Nuclear Translocation of the SOX9 Protein
Brigitte Moniot et al.
DEVELOPMENTAL DYNAMICS (2011)
Effects of Inversions on Within- and Between-Species Recombination and Divergence
Laurie S. Stevison et al.
GENOME BIOLOGY AND EVOLUTION (2011)
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
Gerton Lunter et al.
GENOME RESEARCH (2011)
Testing for Ancient Admixture between Closely Related Populations
Eric Y. Durand et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred G. Grabherr et al.
NATURE BIOTECHNOLOGY (2011)
A framework for variation discovery and genotyping using next-generation DNA sequencing data
Mark A. DePristo et al.
NATURE GENETICS (2011)
Limitations of next-generation genome sequence assembly
Can Alkan et al.
NATURE METHODS (2011)
High-quality draft assemblies of mammalian genomes from massively parallel sequence data
Sante Gnerre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
A vertebrate case study of the quality of assemblies derived from next-generation sequences
Liang Ye et al.
GENOME BIOLOGY (2011)
Improving RNA-Seq expression estimates by correcting for fragment bias
Adam Roberts et al.
GENOME BIOLOGY (2011)
The Distribution and Most Recent Common Ancestor of the 17q21 Inversion in Humans
Michael P. Donnelly et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2010)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Genome-wide synteny through highly sensitive sequence alignment: Satsuma
Manfred G. Grabherr et al.
BIOINFORMATICS (2010)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Evaluation of statistical methods for normalization and differential expression in mRNA-Seq experiments
James H. Bullard et al.
BMC BIOINFORMATICS (2010)
Identification and Frequency Estimation of Inversion Polymorphisms from Haplotype Data
Suzanne S. Sindi et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2010)
Nucleotide divergence vs. gene expression differentiation: comparative transcriptome sequencing in natural isolates from the carrion crow and its hybrid zone with the hooded crow
Jochen B. W. Wolf et al.
MOLECULAR ECOLOGY (2010)
The sequence and de novo assembly of the giant panda genome
Ruiqiang Li et al.
NATURE (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Evolutionary stasis: the stable chromosomes of birds
Hans Ellegren
TRENDS IN ECOLOGY & EVOLUTION (2010)
A scaling normalization method for differential expression analysis of RNA-seq data
Mark D. Robinson et al.
GENOME BIOLOGY (2010)
TopHat: discovering splice junctions with RNA-Seq
Cole Trapnell et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Fast and accurate short read alignment with Burrows-Wheeler transform
Heng Li et al.
BIOINFORMATICS (2009)
Fast model-based estimation of ancestry in unrelated individuals
David H. Alexander et al.
GENOME RESEARCH (2009)
An analysis of population genetic differentiation and genotype-phenotype association across the hybrid zone of carrion and hooded crows using microsatellites and MC1R
Fredrik Haas et al.
MOLECULAR ECOLOGY (2009)
Genome size and wing parameters in passerine birds
Chandler B. Andrews et al.
PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2009)
Revisiting the Impact of Inversions in Evolution: From Population Genetic Markers to Drivers of Adaptive Shifts and Speciation?
Ary A. Hoffmann et al.
ANNUAL REVIEW OF ECOLOGY EVOLUTION AND SYSTEMATICS (2008)
Scipio: Using protein sequences to determine the precise exon/intron structures of genes and their orthologs in closely related species
Oliver Keller et al.
BMC BIOINFORMATICS (2008)
Phylogeny-aware gap placement prevents errors in sequence alignment and evolutionary analysis
Ari Loytynoja et al.
SCIENCE (2008)
Phylogeographic patterns in widespread corvid birds
E. Haring et al.
MOLECULAR PHYLOGENETICS AND EVOLUTION (2007)
Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
Sharon R. Browning et al.
AMERICAN JOURNAL OF HUMAN GENETICS (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Assortative mating of Carrion Corvus corone and Hooded Crows C-cornix in the hybrid zone in eastern Germany
Christoph Randler
ARDEA (2007)
Integration within the Felsenstein equation for improved Markov chain Monte Carlo methods in population genetics
Jody Hey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Evidence for large inversion polymorphisms in the human genome from HapMap data
Vikas Bansal et al.
GENOME RESEARCH (2007)
Principal components analysis corrects for stratification in genome-wide association studies
Alkes L. Price et al.
NATURE GENETICS (2006)
Glutamate receptors on human melanocytes regulate the expression of MiTF
MJ Hoogduijn et al.
PIGMENT CELL RESEARCH (2006)
HIERFSTAT, a package for R to compute and test hierarchical F-statistics
J Goudet
MOLECULAR ECOLOGY NOTES (2005)
Haploview: analysis and visualization of LD and haplotype maps
JC Barrett et al.
BIOINFORMATICS (2005)
APE: Analyses of Phylogenetics and Evolution in R language
E Paradis et al.
BIOINFORMATICS (2004)
The genetic legacy of the Quaternary ice ages
G Hewitt
NATURE (2000)