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Aron Marchler-Bauer et al.
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C. B. Walker et al.
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The Sequence Alignment/Map format and SAMtools
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William Klimke et al.
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J. R. Cole et al.
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David A. Walsh et al.
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Ramy K. Aziz et al.
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Heng Li et al.
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Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
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A. -L. Reysenbach et al.
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Farooq Azam et al.
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Lydie Herfort et al.
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Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
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Ramunas Stepanauskas et al.
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RNAmmer:: consistent and rapid annotation of ribosomal RNA genes
Karin Lagesen et al.
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Phylogenomic analysis of proteins that are distinctive of Archaea and its main subgroups and the origin of methanogenesis
Beile Gao et al.
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Light-powering Escherichia coli with proteorhodopsin
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Shibu Yooseph et al.
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The Sorcerer II Global Ocean Sampling expedition: Northwest Atlantic through Eastern Tropical Pacific
Douglas B. Rusch et al.
PLOS BIOLOGY (2007)
NCBI reference sequences (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins
Kim D. Pruitt et al.
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The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data
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Biosynthesis of ether-type polar lipids in archaea and evolutionary considerations
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Proteorhodopsin lateral gene transfer between marine planktonic Bacteria and Archaea
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Community genomics among stratified microbial assemblages in the ocean's interior
EF DeLong et al.
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From genomics to chemical genomics: new developments in KEGG
Minoru Kanehisa et al.
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GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses
J Besemer et al.
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InterProScan: protein domains identifier
E Quevillon et al.
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Environmental genome shotgun sequencing of the Sargasso Sea
JC Venter et al.
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ARB:: a software environment for sequence data
W Ludwig et al.
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Application of tetranucleotide frequencies for the assignment of genomic fragments
H Teeling et al.
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D Moreira et al.
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O Béjà
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S Kurtz et al.
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S Guindon et al.
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MrBayes 3: Bayesian phylogenetic inference under mixed models
F Ronquist et al.
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MS Rappe et al.
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A Pernthaler et al.
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O Béjà et al.
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A Ruepp et al.
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RL Tatusov et al.
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