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Wei Li et al.
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Jianxing Feng et al.
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Formation, regulation and evolution of Caenorhabditis elegans 3′UTRs
Calvin H. Jan et al.
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Next-generation transcriptome assembly
Jeffrey A. Martin et al.
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Sparse linear modeling of next-generation mRNA sequencing (RNA-Seq) data for isoform discovery and abundance estimation
Jingyi Jessica Li et al.
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Cole Trapnell et al.
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Mitchell Guttman et al.
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Kasper D. Hansen et al.
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rQuant.web: a tool for RNA-Seq-based transcript quantitation
Regina Bohnert et al.
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Ali Mortazavi et al.
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France Denoeud et al.
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Wolfgang Huber et al.
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HB Zhang et al.
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