相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。4DGenome: a comprehensive database of chromatin interactions
Li Teng et al.
BIOINFORMATICS (2015)
What are super-enhancers?
Sebastian Pott et al.
NATURE GENETICS (2015)
DEEP: a general computational framework for predicting enhancers
Dimitrios Kleftogiannis et al.
NUCLEIC ACIDS RESEARCH (2015)
Enhancer Function: Mechanistic and Genome-Wide Insights Come Together
Jennifer L. Plank et al.
MOLECULAR CELL (2014)
An atlas of active enhancers across human cell types and tissues
Robin Andersson et al.
NATURE (2014)
A promoter-level mammalian expression atlas
Alistair R. R. Forrest et al.
NATURE (2014)
Transcriptional enhancers: from properties to genome-wide predictions
Daria Shlyueva et al.
NATURE REVIEWS GENETICS (2014)
RefSeq: an update on mammalian reference sequences
Kim D. Pruitt et al.
NUCLEIC ACIDS RESEARCH (2014)
Integrating Diverse Datasets Improves Developmental Enhancer Prediction
Genevieve D. Erwin et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Enhanced Regulatory Sequence Prediction Using Gapped k-mer Features
Mahmoud Ghandi et al.
PLOS COMPUTATIONAL BIOLOGY (2014)
Master Transcription Factors and Mediator Establish Super-Enhancers at Key Cell Identity Genes
Warren A. Whyte et al.
CELL (2013)
Systematic dissection of regulatory motifs in 2000 predicted human enhancers using a massively parallel reporter assay
Pouya Kheradpour et al.
GENOME RESEARCH (2013)
HOCOMOCO: a comprehensive collection of human transcription factor binding sites models
Ivan V. Kulakovskiy et al.
NUCLEIC ACIDS RESEARCH (2013)
Integrative annotation of chromatin elements from ENCODE data
Michael M. Hoffman et al.
NUCLEIC ACIDS RESEARCH (2013)
Comparative annotation of functional regions in the human genome using epigenomic data
Kyoung-Jae Won et al.
NUCLEIC ACIDS RESEARCH (2013)
kmer-SVM: a web server for identifying predictive regulatory sequence features in genomic data sets
Christopher Fletez-Brant et al.
NUCLEIC ACIDS RESEARCH (2013)
RFECS: A Random-Forest Based Algorithm for Enhancer Identification from Chromatin State
Nisha Rajagopal et al.
PLOS COMPUTATIONAL BIOLOGY (2013)
CistromeMap: a knowledgebase and web server for ChIP-Seq and DNase-Seq studies in mouse and human
Bo Qin et al.
BIOINFORMATICS (2012)
An integrated encyclopedia of DNA elements in the human genome
Ian Dunham et al.
NATURE (2012)
The accessible chromatin landscape of the human genome
Robert E. Thurman et al.
NATURE (2012)
Unsupervised pattern discovery in human chromatin structure through genomic segmentation
Michael M. Hoffman et al.
NATURE METHODS (2012)
ChromHMM: automating chromatin-state discovery and characterization
Jason Ernst et al.
NATURE METHODS (2012)
FIMO: scanning for occurrences of a given motif
Charles E. Grant et al.
BIOINFORMATICS (2011)
Mapping and analysis of chromatin state dynamics in nine human cell types
Jason Ernst et al.
NATURE (2011)
BEDTools: a flexible suite of utilities for comparing genomic features
Aaron R. Quinlan et al.
BIOINFORMATICS (2010)
Discover regulatory DNA elements using chromatin signatures and artificial neural network
Hiram A. Firpi et al.
BIOINFORMATICS (2010)
The NIH Roadmap Epigenomics Mapping Consortium
Bradley E. Bernstein et al.
NATURE BIOTECHNOLOGY (2010)
Genome-wide Mapping of HATs and HDACs Reveals Distinct Functions in Active and Inactive Genes
Zhibin Wang et al.
CELL (2009)
Finding distal regulatory elements in the human genome
Nathaniel D. Heintzman et al.
CURRENT OPINION IN GENETICS & DEVELOPMENT (2009)
Systematic human/zebrafish comparative identification of cis-regulatory activity around vertebrate developmental transcription factor genes
Pavia Navratilova et al.
DEVELOPMENTAL BIOLOGY (2009)
Combinatorial patterns of histone acetylations and methylations in the human genome
Zhibin Wang et al.
NATURE GENETICS (2008)
Analysis and synthesis of high-amplitude Cis-elements in the mammalian circadian clock
Yuichi Kumaki et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
Genome-wide mapping of in vivo protein-DNA interactions
David S. Johnson et al.
SCIENCE (2007)
VISTA Enhancer Browser - a database of tissue-specific human enhancers
Axel Visel et al.
NUCLEIC ACIDS RESEARCH (2007)
PReMod: a database of genome-wide mammalian cis-regulatory module predictions
Vincent Ferretti et al.
NUCLEIC ACIDS RESEARCH (2007)
CAGE: cap analysis of gene expression
R Kodzius et al.
NATURE METHODS (2006)