4.5 Article

Nodes occupying central positions in human tissue specific PPI networks are enriched with many splice variants

期刊

PROTEOMICS
卷 14, 期 20, 页码 2242-2248

出版社

WILEY
DOI: 10.1002/pmic.201400249

关键词

Alternative splicing; Bioinformatics; Domain-domain interaction; Protein-protein interactions; RNA-seq; Tissue-specific

资金

  1. Senior Research Fellowship (SRF) from University Grants Commission (UGC), India
  2. CDFD

向作者/读者索取更多资源

The functional repertoire of genes in the eukaryotic organisms is enhanced by the phenomenon of alternative splicing. Hence, a node in a tissue specific protein-protein interaction (TS PPIN) network can be thought of as an ensemble of various spliced protein products of the corresponding gene expressed in that tissue. Here we demonstrate that the nodes that occupy topologically central positions characterized by high degree, betweenness, closeness, and eigenvector centrality values in TS PPINs of Homo sapiens are associated with high number of splice variants. We also show that the high centrality of these genes/nodes could in part be explained by the presence of a large number of promiscuous domains.

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