4.5 Review

Mass spectrometry-based targeted quantitative proteomics: Achieving sensitive and reproducible detection of proteins

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Selected reaction monitoring applied to proteomics

Sebastien Gallien et al.

JOURNAL OF MASS SPECTROMETRY (2011)

Review Biochemical Research Methods

Evolution of Clinical Proteomics and its Role in Medicine

Emily Boja et al.

JOURNAL OF PROTEOME RESEARCH (2011)

Article Biochemical Research Methods

Collision Energy Optimization of b- and y-Ions for Multiple Reaction Monitoring Mass Spectrometry

Carly A. Holstein (Sherwood) et al.

JOURNAL OF PROTEOME RESEARCH (2011)

Review Biochemical Research Methods

Targeted mass spectrometry approaches for protein biomarker verification

Zhaojing Meng et al.

JOURNAL OF PROTEOMICS (2011)

Article Biochemical Research Methods

Evaluation of Large Scale Quantitative Proteomic Assay Development Using Peptide Affinity-based Mass Spectrometry

Jeffrey R. Whiteaker et al.

MOLECULAR & CELLULAR PROTEOMICS (2011)

Article Biochemical Research Methods

mProphet: automated data processing and statistical validation for large-scale SRM experiments

Lukas Reiter et al.

NATURE METHODS (2011)

Article Multidisciplinary Sciences

Mutant proteins as cancer-specific biomarkers

Qing Wang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Multidisciplinary Sciences

High-throughput ectopic expression screen for tamoxifen resistance identifies an atypical kinase that blocks autophagy

Laura Gonzalez-Malerva et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemical Research Methods

A database of reaction monitoring mass spectrometry assays for elucidating therapeutic response in cancer

Elizabeth R. Remily-Wood et al.

PROTEOMICS CLINICAL APPLICATIONS (2011)

Article Biochemical Research Methods

Skyline: an open source document editor for creating and analyzing targeted proteomics experiments

Brendan MacLean et al.

BIOINFORMATICS (2010)

Review Chemistry, Multidisciplinary

Clinical Protein Science and Bioanalytical Mass Spectrometry with an Emphasis on Lung Cancer

Akos Vegvari et al.

CHEMICAL REVIEWS (2010)

Article Medical Laboratory Technology

Protein-Based Multiplex Assays: Mock Presubmissions to the US Food and Drug Administration

Fred E. Regnier et al.

CLINICAL CHEMISTRY (2010)

Review Medical Laboratory Technology

Integration of Proteomic-Based Tools for Improved Biomarkers of Myocardial Injury

Robert E. Gerszten et al.

CLINICAL CHEMISTRY (2010)

Review Medical Laboratory Technology

The Clinical Plasma Proteome: A Survey of Clinical Assays for Proteins in Plasma and Serum

N. Leigh Anderson

CLINICAL CHEMISTRY (2010)

Article Medical Laboratory Technology

Comparison of Multiplex Immunoassay Platforms

Qin Fu et al.

CLINICAL CHEMISTRY (2010)

Article Biochemistry & Molecular Biology

Quantitative immunohistochemistry in lung cancer: clinical perspective

Ewa Szutowicz et al.

FOLIA HISTOCHEMICA ET CYTOBIOLOGICA (2010)

Article Biochemical Research Methods

Verification of Biomarkers for Diabetic Retinopathy by Multiple Reaction Monitoring

Kyunggon Kim et al.

JOURNAL OF PROTEOME RESEARCH (2010)

Article Biochemical Research Methods

Towards the Development of an Immuno MALDI (iMALDI) Mass Spectrometry Assay for the Diagnosis of Hypertension

Jennifer D. Reid et al.

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY (2010)

Article Biochemical Research Methods

High-throughput generation of selected reaction-monitoring assays for proteins and proteomes

Paola Picotti et al.

NATURE METHODS (2010)

Review Biochemical Research Methods

Multiplex assays for biomarker research and clinical application: Translational science coming of age

Qin Fu et al.

PROTEOMICS CLINICAL APPLICATIONS (2010)

Review Oncology

Activity-based protein profiling for biochemical pathway discovery in cancer

Daniel K. Nomura et al.

NATURE REVIEWS CANCER (2010)

Review Oncology

The evolving role of mass spectrometry in cancer biomarker discovery

Pei Wang et al.

CANCER BIOLOGY & THERAPY (2009)

Review Biotechnology & Applied Microbiology

Multiplexed microbead immunoassays by flow cytometry for molecular profiling: Basic concepts and proteomics applications

V. V. Krishhan et al.

CRITICAL REVIEWS IN BIOTECHNOLOGY (2009)

Article Respiratory System

Multiplex immune serum biomarker profiling in sarcoidosis and systemic sclerosis

P. Beirne et al.

EUROPEAN RESPIRATORY JOURNAL (2009)

Review Biochemical Research Methods

The fundamental flaws of immunoassays and potential solutions using tandem mass spectrometry

Andrew N. Hoofnagle et al.

JOURNAL OF IMMUNOLOGICAL METHODS (2009)

Review Biochemical Research Methods

Microfluidic chips for mass spectrometry-based proteomics

Jeonghoon Lee et al.

JOURNAL OF MASS SPECTROMETRY (2009)

Article Biochemical Research Methods

Quantitative Serum Proteomics Using Dual Stable Isotope Coding and nano LC-MS/MSMS

Hong Wang et al.

JOURNAL OF PROTEOME RESEARCH (2009)

Review Biochemical Research Methods

Isotope dilution strategies for absolute quantitative proteomics

Virginie Brun et al.

JOURNAL OF PROTEOMICS (2009)

Review Biochemical Research Methods

A Human Proteome Detection and Quantitation Project

N. Leigh Anderson et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biochemical Research Methods

SISCAPA Peptide Enrichment on Magnetic Beads Using an In-line Bead Trap Device

N. Leigh Anderson et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biochemical Research Methods

Multiple Reaction Monitoring-based, Multiplexed, Absolute Quantitation of 45 Proteins in Human Plasma

Michael A. Kuzyk et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biochemical Research Methods

Quantification of Cardiovascular Biomarkers in Patient Plasma by Targeted Mass Spectrometry and Stable Isotope Dilution

Hasmik Keshishian et al.

MOLECULAR & CELLULAR PROTEOMICS (2009)

Article Biotechnology & Applied Microbiology

Prediction of high-responding peptides for targeted protein assays by mass spectrometry

Vincent A. Fusaro et al.

NATURE BIOTECHNOLOGY (2009)

Article Biochemical Research Methods

A HUPO test sample study reveals common problems in mass spectrometry-based proteomics

Alexander W. Bell et al.

NATURE METHODS (2009)

Review Biochemistry & Molecular Biology

PeptideAtlas: a resource for target selection for emerging targeted proteomics workflows

Eric W. Deutsch et al.

EMBO REPORTS (2008)

Article Biochemical Research Methods

Enhanced Detection of Low Abundance Human Plasma Proteins Using a Tandem IgY12-SuperMix Immunoaffinity Separation Strategy

Wei-Jun Qian et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Letter Biochemical Research Methods

A database of mass spectrometric assays for the yeast proteome

Paola Picotti et al.

NATURE METHODS (2008)

Article Biochemistry & Molecular Biology

PRIDE: new developments and new datasets

Philip Jones et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

Quantitative, multiplexed assays for low abundance proteins in plasma by targeted mass spectrometry and stable isotope dilution

Hasmik Keshishian et al.

MOLECULAR & CELLULAR PROTEOMICS (2007)

Article Biochemical Research Methods

Development of an immuno tandem mass spectrometry (iMALDI) assay for EGFR diagnosis

Jian Jiang et al.

PROTEOMICS CLINICAL APPLICATIONS (2007)

Article Multidisciplinary Sciences

Multiple reaction monitoring for robust quantitative proteomic analysis of cellular signaling networks

Alejandro Wolf-Yadlin et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

A clickable inhibitor reveals context-dependent autoactivation of p90 RSK

Michael S. Cohen et al.

NATURE CHEMICAL BIOLOGY (2007)

Article Biochemical Research Methods

Antibody-based enrichment of peptides for mass-spectrometry-based quantification on magnetic beads of serum biomarkers

Jeffrey R. Whiteaker et al.

ANALYTICAL BIOCHEMISTRY (2007)

Article Multidisciplinary Sciences

Activity-based probes for proteomic profiling of histone deacetylase complexes

Cleo M. Salisbury et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemistry & Molecular Biology

Functional interrogation of the kinome using nucleotide acyl phosphates

Matthew P. Patricelli et al.

BIOCHEMISTRY (2007)

Article Biotechnology & Applied Microbiology

eComputational prediction of proteotypic peptides for quantitative proteomics

Parag Mallick et al.

NATURE BIOTECHNOLOGY (2007)

Article Biochemical Research Methods

Prediction of peptides observable by mass spectrometry applied at the experimental set level

William S. Sanders et al.

BMC BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Proteomic profiling of metalloprotease activities with cocktails of active-site probes

SA Sieber et al.

NATURE CHEMICAL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Activity profiling of deubiquitinating enzymes in cervical carcinoma biopsies and cell lines

U Rolén et al.

MOLECULAR CARCINOGENESIS (2006)

Article Biochemical Research Methods

A streamlined platform for high-content functional proteomics of primary human specimens

N Jessani et al.

NATURE METHODS (2005)

Article Biochemistry & Molecular Biology

Activity-based probes that target diverse cysteine protease families

D Kato et al.

NATURE CHEMICAL BIOLOGY (2005)

Article Biochemistry & Molecular Biology

Profiling enzyme activities in vivo using click chemistry methods

AE Speers et al.

CHEMISTRY & BIOLOGY (2004)

Article Biochemical Research Methods

Open source system for analyzing, validating, and storing protein identification data

R Craig et al.

JOURNAL OF PROTEOME RESEARCH (2004)

Article Multidisciplinary Sciences

Activity-based probes for protein tyrosine phosphatases

S Kumar et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Biochemical Research Methods

The human plasma proteome - History, character, and diagnostic prospects

NL Anderson et al.

MOLECULAR & CELLULAR PROTEOMICS (2002)