4.3 Article

Benchmarking protein-protein interface predictions: Why you should care about protein size

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemical Research Methods

Predicting protein-protein interface residues using local surface structural similarity

Rafael A. Jordan et al.

BMC BIOINFORMATICS (2012)

Article Biophysics

Arbitrary protein-protein docking targets biologically relevant interfaces

Juliette Martin et al.

BMC BIOPHYSICS (2012)

Article Biochemical Research Methods

Improving the prediction of protein binding sites by combining heterogeneous data and Voronoi diagrams

Joan Segura et al.

BMC BIOINFORMATICS (2011)

Article Biochemical Research Methods

pROC: an open-source package for R and S plus to analyze and compare ROC curves

Xavier Robin et al.

BMC BIOINFORMATICS (2011)

Review Chemistry, Multidisciplinary

Prediction of protein binding sites and hot spots

Juan Fernandez-Recio

WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE (2011)

Article Biochemistry & Molecular Biology

Protein-protein docking benchmark version 4.0

Howook Hwang et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)

Article Biochemical Research Methods

Joint Evolutionary Trees: A Large-Scale Method To Predict Protein Interfaces Based on Sequence Sampling

Stefan Engelen et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemical Research Methods

meta-PPISP: a meta web server for protein-protein interaction site prediction

Sanbo Qin et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Exploiting sequence and structure homologs to identify protein-protein binding sites

JL Chung et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Protein binding site prediction using an empirical scoring function

Shide Liang et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data

HL Chen et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)

Article Biochemical Research Methods

Improved prediction of protein-protein binding sites using a support vector machines approach

JR Bradford et al.

BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

ProMate: A structure based prediction program to identify the location of protein-protein binding sites

H Neuvirth et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Identification of protein-protein interaction sites from docking energy landscapes

J Fernández-Recio et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Dissecting protein-protein recognition sites

P Chakrabarti et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2002)

Article Biochemistry & Molecular Biology

Prediction of protein interaction sites from sequence profile and residue neighbor list

HX Zhou et al.

PROTEINS-STRUCTURE FUNCTION AND GENETICS (2001)