相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Application of asymmetric statistical potentials to antibody-protein docking
Ryan Brenke et al.
BIOINFORMATICS (2012)
Energy design for protein-protein interactions
D. V. S. Ravikant et al.
JOURNAL OF CHEMICAL PHYSICS (2011)
A Large Decoy Set of Protein-Protein Complexes Produced by Flexible Docking
Guillaume Launay et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)
dockYard-a repository to assist modeling of protein-protein docking
Pralay Mitra et al.
JOURNAL OF MOLECULAR MODELING (2011)
SKATE: A Docking Program that Decouples Systematic Sampling from Scoring
Jianwen A. Feng et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2010)
A Novel Side-Chain Orientation Dependent Potential Derived from Random-Walk Reference State for Protein Fold Selection and Structure Prediction
Jian Zhang et al.
PLOS ONE (2010)
PIE-efficient filters and coarse grained potentials for unbound protein-protein docking
D. V. S. Ravikant et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
Docking and scoring protein interactions: CAPRI 2009
Marc F. Lensink et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
Protein-protein docking benchmark version 4.0
Howook Hwang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
Convergence and combination of methods in protein-protein docking
Sandor Vajda et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2009)
Consensus scoring for enriching near-native structures from protein-protein docking decoys
Shide Liang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
DOCKGROUND protein-protein docking decoy set
Shiyong Liu et al.
BIOINFORMATICS (2008)
DARS (Decoys As the Reference State) Potentials for Protein-Protein Docking
Gwo-Yu Chuang et al.
BIOPHYSICAL JOURNAL (2008)
Recent progress and future directions in protein-protein docking
David W. Ritchie
CURRENT PROTEIN & PEPTIDE SCIENCE (2008)
Discrimination of near-native structures in protein-protein docking by testing the stability of local minima
Dima Kozakov et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
An iterative knowledge-based scoring function for protein-protein recognition
Sheng-You Huang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Principles of flexible protein-protein docking
Nelly Andrusier et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Protein-protein docking benchmark version 3.0
Howook Hwang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Docking and scoring protein complexes: CAPRI 3rd edition
Marc F. Lensink et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
ClusPro: Performance in CAPRI rounds 6-11 and the new server
Stephen R. Comeau et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Integrating statistical pair potentials into protein complex prediction
Julian Mintseris et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
FireDock: Fast interaction refinement in molecular docking
Nelly Andrusier et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
ZRANK: Reranking protein docking predictions with an optimized energy function
Brian Pierce et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
All-atom ab initio folding of a diverse set of proteins
Jae Shick Yang et al.
STRUCTURE (2007)
PIPER: An FFT-based protein docking program with pairwise potentials
Dima Kozakov et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
GRAMM-X public web server for protein-protein docking
Andrey Tovchigrechko et al.
NUCLEIC ACIDS RESEARCH (2006)
Optimal design of protein docking potentials: Efficiency and limitations
D Tobi et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Docking prediction using biological information, ZDOCK sampling technique, and clustering guided by the DFIRE statistical energy function
C Zhang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Geometry-based flexible and symmetric protein docking
D Schneidman-Duhovny et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures
R Méndez et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Protein-protein docking benchmark 2.0: An update
J Mintseris et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Optimal clustering for detecting near-native conformations in protein docking
D Kozakov et al.
BIOPHYSICAL JOURNAL (2005)
PatchDock and SymmDock: servers for rigid and symmetric docking
D Schneidman-Duhovny et al.
NUCLEIC ACIDS RESEARCH (2005)
A hierarchical approach to all-atom protein loop prediction
MP Jacobson et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
ClusPro: An automated docking and discrimination method for the prediction of protein complexes
SR Comeau et al.
BIOINFORMATICS (2004)
RDOCK: Refinement of rigid-body protein docking predictions
L Li et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)
An improved protein decoy set for testing energy functions for protein structure prediction
J Tsai et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
JJ Gray et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Comparative protein structure modeling by iterative alignment, model building and model assessment
B John et al.
NUCLEIC ACIDS RESEARCH (2003)
CAPRI: A Critical Assessment of PRedicted Interactions
J Janin et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)
ICM-DISCO docking by global energy optimization with fully flexible side-chains
J Fernández-Recio et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2003)
ZDOCK: An initial-stage protein-docking algorithm
R Chen et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)
A protein-protein docking benchmark
R Chen et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2003)
Development of unified statistical potentials describing protein-protein interactions
H Lu et al.
BIOPHYSICAL JOURNAL (2003)
MOPED: Method for optimizing physical energy parameters using decoys
C Seok et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2003)
Combination of scoring functions improves discrimination in protein-protein docking
J Murphy et al.
PROTEINS-STRUCTURE FUNCTION AND GENETICS (2003)
Distinguishing native conformations of proteins from decoys with an effective free energy estimator based on the OPLS all-atom force field and the surface generalized born solvent model
AK Felts et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2002)
Prediction of protein-protein interactions by docking methods
GR Smith et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2002)
Decoys 'R' Us: A database of incorrect conformations to improve protein structure prediction
R Samudrala et al.
PROTEIN SCIENCE (2000)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
