相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Theoretical and Computational Protein Design
Ilan Samish et al.
ANNUAL REVIEW OF PHYSICAL CHEMISTRY, VOL 62 (2011)
COMBREX: COMputational BRidge to EXperiments
Richard J. Roberts
BIOCHEMICAL SOCIETY TRANSACTIONS (2011)
Molecular Surface Representation Using 3D Zernike Descriptors for Protein Shape Comparison and Docking
Daisuke Kihara et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2011)
Fingerprint-based structure retrieval using electron density
Shuangye Yin et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)
A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction
Brice Hoffmann et al.
BMC BIOINFORMATICS (2010)
BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server
Bing Xiong et al.
BMC BIOINFORMATICS (2010)
Improved protein surface comparison and application to low-resolution protein structure data
Lee Sael et al.
BMC BIOINFORMATICS (2010)
Computational Modeling of Structure-Function of G Protein-Coupled Receptors with Applications for Drug Design
Y. Y. Li et al.
CURRENT MEDICINAL CHEMISTRY (2010)
Binding Ligand Prediction for Proteins Using Partial Matching of Local Surface Patches
Lee Sael et al.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2010)
The Gene Ontology in 2010: extensions and refinements The Gene Ontology Consortium
Tanya Z. Berardini et al.
NUCLEIC ACIDS RESEARCH (2010)
On the diversity of physicochemical environments experienced by identical ligands in binding pockets of unrelated proteins
Abdullah Kahraman et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
Real-time ligand binding pocket database search using local surface descriptors
Rayan Chikhi et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
The protein-small-molecule database, a non-redundant structural resource for the analysis of protein-ligand binding
Izhar Wallach et al.
BIOINFORMATICS (2009)
3D-SURFER: software for high-throughput protein surface comparison and analysis
David La et al.
BIOINFORMATICS (2009)
Protein-protein docking using region-based 3D Zernike descriptors
Vishwesh Venkatraman et al.
BMC BIOINFORMATICS (2009)
FINDSITE: a combined evolution/structure-based approach to protein function prediction
Jeffrey Skolnick et al.
BRIEFINGS IN BIOINFORMATICS (2009)
Potential for Protein Surface Shape Analysis Using Spherical Harmonics and 3D Zernike Descriptors
Vishwesh Venkatraman et al.
CELL BIOCHEMISTRY AND BIOPHYSICS (2009)
Rapid Comparison of Protein Binding Site Surfaces with Property Encoded Shape Distributions
Sourav Das et al.
JOURNAL OF CHEMICAL INFORMATION AND MODELING (2009)
Application of 3D Zernike descriptors to shape-based ligand similarity searching
Vishwesh Venkatraman et al.
JOURNAL OF CHEMINFORMATICS (2009)
New paradigm in protein function prediction for large scale omics analysis
Troy Hawkins et al.
MOLECULAR BIOSYSTEMS (2008)
Rapid comparison of properties on protein surface
Lee Sael et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Fast protein tertiary structure retrieval based on global surface shape similarity
Lee Sael et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Characterization of local geometry of protein surfaces with the visibility criterion
Bin Li et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Method for comparing the structures of protein ligand-binding sites and application for predicting protein-drug interactions
Ryoichi Minai et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
What is the relationship between the global structures of apo and holo proteins?
Michal Brylinski et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
eF-seek: prediction of the functional sites of proteins by searching for similar electrostatic potential and molecular surface shape
Kengo Kinoshita et al.
NUCLEIC ACIDS RESEARCH (2007)
Shape variation in protein binding pockets and their ligands
Abdullah Kahraman et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
LIGSITEcsc:: predicting ligand binding sites using the Connolly surface and degree of conservation
Bingding Huang et al.
BMC STRUCTURAL BIOLOGY (2006)
The multiple common point set problem and its application to molecule binding pattern detection
M Shatsky et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2006)
Fold independent structural comparisons of protein-ligand binding sites for exploring functional relationships
ND Gold et al.
JOURNAL OF MOLECULAR BIOLOGY (2006)
The impact of structural genomics: Expectations and outcomes
JM Chandonia et al.
SCIENCE (2006)
Computational protein design: A novel path to future protein drugs
M. Rosenberg et al.
CURRENT PHARMACEUTICAL DESIGN (2006)
Predicting protein function from sequence and structural data
JD Watson et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2005)
Automatic annotation of protein function
A Valencia
CURRENT OPINION IN STRUCTURAL BIOLOGY (2005)
Real spherical harmonic expansion coefficients as 3D shape descriptors for protein binding pocket and ligand comparisons
RJ Morris et al.
BIOINFORMATICS (2005)
Large-scale assessment of the utility of low-resolution protein structures for biochemical function assignment
AK Arakaki et al.
BIOINFORMATICS (2004)
Identifying protein function - A call for community action
RJ Roberts
PLOS BIOLOGY (2004)
The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data
CT Porter et al.
NUCLEIC ACIDS RESEARCH (2004)
SURFACE: a database of protein surface regions for functional annotation
F Ferre et al.
NUCLEIC ACIDS RESEARCH (2004)
Shape distributions
R Osada et al.
ACM TRANSACTIONS ON GRAPHICS (2002)
Electrostatics of nanosystems: Application to microtubules and the ribosome
NA Baker et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
The Protein Data Bank
HM Berman et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
