相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Are Scoring Functions in Protein-Protein Docking Ready To Predict Interactomes? Clues from a Novel Binding Affinity Benchmark
Panagiotis L. Kastritis et al.
JOURNAL OF PROTEOME RESEARCH (2010)
Building Macromolecular Assemblies by Information-driven Docking
Ezgi Karaca et al.
MOLECULAR & CELLULAR PROTEOMICS (2010)
FiberDock: a web server for flexible induced-fit backbone refinement in molecular docking
Efrat Mashiach et al.
NUCLEIC ACIDS RESEARCH (2010)
The targets of CAPRI Rounds 13-19
Joel Janin
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
An integrated suite of fast docking algorithms
Efrat Mashiach et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
Determining macromolecular assembly structures by molecular docking and fitting into an electron density map
Keren Lasker et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
ProtorP: a protein-protein interaction analysis server
Christopher Reynolds et al.
BIOINFORMATICS (2009)
Protein Complexes: The Evolution of Symmetry
Kevin W. Plaxco et al.
CURRENT BIOLOGY (2009)
Emergence of symmetry in homooligomeric biological assemblies
Ingemar Andre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
The interface of protein-protein complexes: Analysis of contacts and prediction of interactions
R. P. Bahadur et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2008)
Prediction of the structure of symmetrical protein assemblies
Ingemar Andre et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
FireDock: Fast interaction refinement in molecular docking
Nelly Andrusier et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
PIER: Protein interface recognition for structural proteomics
Irina Kufareva et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Prediction-based fingerprints of protein-protein interactions
Aleksey Porollo et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Rapidly convergent procedure to solve the density profile equation in the classical density functional theory
SQ Zhou
JOURNAL OF COMPUTATIONAL CHEMISTRY (2006)
Optimization of multiple-sequence alignment based on multiple-structure alignment
M Shatsky et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Protein binding site prediction using an empirical scoring function
Shide Liang et al.
NUCLEIC ACIDS RESEARCH (2006)
Prediction of interface residues in protein-protein complexes by a consensus neural network method: Test against NMR data
HL Chen et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Classification of protein complexes based on docking difficulty
S Vajda
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Geometry-based flexible and symmetric protein docking
D Schneidman-Duhovny et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Modeling oligomers with Cn or Dn symmetry:: Application to CAPRI Target 10
A Berchanski et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures
R Méndez et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Protein-protein docking benchmark 2.0: An update
J Mintseris et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
PatchDock and SymmDock: servers for rigid and symmetric docking
D Schneidman-Duhovny et al.
NUCLEIC ACIDS RESEARCH (2005)
Prediction of multimolecular assemblies by multiple docking
Y Inbar et al.
JOURNAL OF MOLECULAR BIOLOGY (2005)
Predicting oligomeric assemblies:: N-mers a primer
SR Comeau et al.
JOURNAL OF STRUCTURAL BIOLOGY (2005)
M-ZDOCK:: a grid-based approach for Cn symmetric multimer docking
B Pierce et al.
BIOINFORMATICS (2005)
ProMate: A structure based prediction program to identify the location of protein-protein binding sites
H Neuvirth et al.
JOURNAL OF MOLECULAR BIOLOGY (2004)
UCSF chimera - A visualization system for exploratory research and analysis
EF Pettersen et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)
Construction of molecular assemblies via docking:: Modeling of tetramers with D2 symmetry
A Berchanski et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)
Protein structure prediction via combinatorial assembly of sub-structural units
Yuval Inbar et al.
BIOINFORMATICS (2003)
Functional organization of the yeast proteome by systematic analysis of protein complexes
AC Gavin et al.
NATURE (2002)
Protein docking using continuum electrostatics and geometric fit
JG Mandell et al.
PROTEIN ENGINEERING (2001)
The BPTI decamer observed in acidic pH crystal forms pre-exists as a stable species in solution
C Hamiaux et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)