4.3 Article

Prescont: Predicting protein-protein interfaces utilizing four residue properties

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Chemistry, Multidisciplinary

Functional Assignment of an Enzyme that Catalyzes the Synthesis of an Archaea-Type Ether Lipid in Bacteria

Harald Guldan et al.

ANGEWANDTE CHEMIE-INTERNATIONAL EDITION (2011)

Article Chemistry, Multidisciplinary

PROCOS: Computational Analysis of Protein-Protein Complexes

Florian Fink et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2011)

Article Biochemical Research Methods

BALL - biochemical algorithms library 1.3

Andreas Hildebrandt et al.

BMC BIOINFORMATICS (2010)

Review Biochemistry & Molecular Biology

Accounting for conformational changes during protein-protein docking

Martin Zacharias

CURRENT OPINION IN STRUCTURAL BIOLOGY (2010)

Article Biochemistry & Molecular Biology

The Universal Protein Resource (UniProt) in 2010

Rolf Apweiler et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemistry & Molecular Biology

Geometrically centered region: A wet model of protein binding hot spots not excluding water molecules

Zhenhua Li et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Protein-protein docking benchmark version 4.0

Howook Hwang et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

i-Patch: Interprotein contact prediction using local network information

Rebecca Hamer et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Blind predictions of protein interfaces by docking calculations in CAPRI

Marc F. Lensink et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)

Article Biochemical Research Methods

Prediction of protein-protein interaction sites using an ensemble method

Lei Deng et al.

BMC BIOINFORMATICS (2009)

Review Biochemical Research Methods

Progress and challenges in predicting protein-protein interaction sites

Lakes Ezkurdia et al.

BRIEFINGS IN BIOINFORMATICS (2009)

Review Biochemistry & Molecular Biology

Data Deposition and Annotation at the Worldwide Protein Data Bank

Shuchismita Dutta et al.

MOLECULAR BIOTECHNOLOGY (2009)

Article Biochemistry & Molecular Biology

Shelling the Voronoi interface of protein-protein complexes reveals patterns of residue conservation, dynamics, and composition

Benjamin Bouvier et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Multidisciplinary Sciences

Proteome Organization in a Genome-Reduced Bacterium

Sebastian Kuehner et al.

SCIENCE (2009)

Article Biochemistry & Molecular Biology

Robustness of the residue conservation score reflecting both frequencies and physicochemistries

X. -S. Liu et al.

AMINO ACIDS (2008)

Review Biochemistry & Molecular Biology

How proteins get in touch: Interface prediction in the study of biomolecular complexes

Sjoerd J. de Vries et al.

CURRENT PROTEIN & PEPTIDE SCIENCE (2008)

Article Biochemistry & Molecular Biology

The RosettaDock server for local proteinprotein docking

Sergey Lyskov et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemistry & Molecular Biology

On defining the dynamics of hydrophobic patches on protein surfaces

Philip Lijnzaad et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)

Editorial Material Multidisciplinary Sciences

Biochemistry - A postgenomic visual icon

John N. Weinstein

SCIENCE (2008)

Article Biochemistry & Molecular Biology

Structure of the yeast tRNA m7G methylation complex

Nicolas Leulliot et al.

STRUCTURE (2008)

Article Biochemistry & Molecular Biology

Data growth and its impact on the SCOP database: new developments

Antonina Andreeva et al.

NUCLEIC ACIDS RESEARCH (2008)

Article Biochemical Research Methods

meta-PPISP: a meta web server for protein-protein interaction site prediction

Sanbo Qin et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets

Sjoerd J. De Vries et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

ProMateus - an open research approach to protein-binding sites analysis

Hani Neuvirth et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biochemistry & Molecular Biology

PIER: Protein interface recognition for structural proteomics

Irina Kufareva et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemical Research Methods

Protein-protein interaction site prediction based on conditional random fields

Ming-Hui Li et al.

BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training

Ofer Dor et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemistry & Molecular Biology

Prediction-based fingerprints of protein-protein interactions

Aleksey Porollo et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)

Article Biochemical Research Methods

ISIS: interaction sites identified from sequence

Yanay Ofran et al.

BIOINFORMATICS (2007)

Review Biochemical Research Methods

Interaction-site prediction for protein complexes: a critical assessment

Huan-Xiang Zhou et al.

BIOINFORMATICS (2007)

Article Biochemical Research Methods

3D complex: A structural classification of protein complexes

Emmanuel D. Levy et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

Insights into protein-protein interfaces using a Bayesian network prediction method

James R. Bradford et al.

JOURNAL OF MOLECULAR BIOLOGY (2006)

Article Biochemical Research Methods

SHARP2:: protein-protein interaction predictions using patch analysis

Yoichi Murakami et al.

BIOINFORMATICS (2006)

Article Biochemical Research Methods

Predicting protein interaction sites: binding hot-spots in protein-protein and protein-ligand interfaces

Nicholas J. Burgoyne et al.

BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

Conservation and relative importance of residues across protein-protein interfaces

M Guharoy et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)

Article Biochemistry & Molecular Biology

Generation and analysis of a protein-protein interface data set with similar chemical and spatial patterns of interactions

S Mintz et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)

Article Biochemistry & Molecular Biology

Structural analysis of a set of proteins resulting from a bacterial genomics project

J Badger et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)

Article Biochemical Research Methods

Improved prediction of protein-protein binding sites using a support vector machines approach

JR Bradford et al.

BIOINFORMATICS (2005)

Review Biochemistry & Molecular Biology

Morphological aspects of oligorneric protein structures

H Ponstingl et al.

PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY (2005)

Article Biochemistry & Molecular Biology

ProMate: A structure based prediction program to identify the location of protein-protein binding sites

H Neuvirth et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

MUSCLE: multiple sequence alignment with high accuracy and high throughput

RC Edgar

NUCLEIC ACIDS RESEARCH (2004)

Article Biochemistry & Molecular Biology

A dissection of specific and non-specific protein - Protein interfaces

RP Bahadur et al.

JOURNAL OF MOLECULAR BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Prediction of protein-protein interaction sites using support vector machines

A Koike et al.

PROTEIN ENGINEERING DESIGN & SELECTION (2004)

Article Biochemistry & Molecular Biology

Are protein-protein interfaces more conserved in sequence than the rest of the protein surface?

DR Caffrey et al.

PROTEIN SCIENCE (2004)

Review Biochemistry & Molecular Biology

The power of two: protein dimerization in biology

NJ Marianayagam et al.

TRENDS IN BIOCHEMICAL SCIENCES (2004)

Article Biochemistry & Molecular Biology

Dissecting subunit interfaces in homodimeric proteins

RP Bahadur et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)

Article Biochemistry & Molecular Biology

Predicted protein-protein interaction sites from local sequence information

Y Ofran et al.

FEBS LETTERS (2003)

Review Biochemistry & Molecular Biology

Structural characterisation and functional significance of transient protein-protein interactions

IMA Nooren et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Biochemistry & Molecular Biology

Analysing six types of protein-protein interfaces

Y Ofran et al.

JOURNAL OF MOLECULAR BIOLOGY (2003)

Article Biochemistry & Molecular Biology

Scoring residue conservation

WSJ Valdar

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2002)

Article Biochemistry & Molecular Biology

Prediction of protein-protein interaction sites in heterocomplexes with neural networks

P Fariselli et al.

EUROPEAN JOURNAL OF BIOCHEMISTRY (2002)

Article Biochemistry & Molecular Biology

A fast method to predict protein interaction sites from sequences

X Gallet et al.

JOURNAL OF MOLECULAR BIOLOGY (2000)