相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Sub-AQUA: real-value quality assessment of protein structure models
Yifeng David Yang et al.
PROTEIN ENGINEERING DESIGN & SELECTION (2010)
Derivation and testing of pair potentials for protein folding. When is the quasichemical approximation correct?
Jeffrey Skolnick et al.
PROTEIN SCIENCE (2010)
Protein Structure Prediction by Pro-Sp3-TASSER
Hongyi Zhou et al.
BIOPHYSICAL JOURNAL (2009)
A Guide to Template Based Structure Prediction
Xiaotao Qu et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2009)
Quality Assessment of Protein Structure Models
Daisuke Kihara et al.
CURRENT PROTEIN & PEPTIDE SCIENCE (2009)
Free-Energy-Driven Folding and Thermodynamics of the 67-Residue Protein GS-α3W-A Large-Scale Monte Carlo Study
Jan H. Meinke et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2009)
Structural relationships among proteins with different global topologies and their implications for function annotation strategies
Donald Petrey et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
The continuity of protein structure space is an intrinsic property of proteins
Jeffrey Skolnick et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Critical assessment of methods of protein structure prediction-Round VIII
John Moult et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)
Macromolecular modeling with Rosetta
Rhiju Das et al.
ANNUAL REVIEW OF BIOCHEMISTRY (2008)
Multiple Sequence Alignment by Conformational Space Annealing
Keehyoung Joo et al.
BIOPHYSICAL JOURNAL (2008)
Computational techniques for efficient conformational sampling of proteins
Adam Liwo et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)
Progress and challenges in protein structure prediction
Yang Zhang
CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)
SP5: Improving Protein Fold Recognition by Using Torsion Angle Profiles and Profile-Based Gap Penalty Model
Wei Zhang et al.
PLOS ONE (2008)
Fragment-HMM: A new approach to protein structure prediction
Shuai Cheng Li et al.
PROTEIN SCIENCE (2008)
Threading without optimizing weighting factors for scoring function
Yifeng David Yang et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Improving the accuracy of template-based predictions by mixing and matching between initial models
Tianyun Liu et al.
BMC STRUCTURAL BIOLOGY (2008)
Systematic analysis of the effect of multiple templates on the accuracy of comparative models of protein structure
Suvobrata Chakravarty et al.
BMC STRUCTURAL BIOLOGY (2008)
A multi-template combination algorithm for protein comparative modeling
Jianlin Cheng
BMC STRUCTURAL BIOLOGY (2008)
Estimating quality of template-based protein models by alignment stability
Hao Chen et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
Data growth and its impact on the SCOP database: new developments
Antonina Andreeva et al.
NUCLEIC ACIDS RESEARCH (2008)
Fold recognition by concurrent use of solvent accessibility and residue depth
Song Liu et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Effective sampling in the configurational space of a small peptide by the multicanonical-multioverlap algorithm
Satoru G. Itoh et al.
PHYSICAL REVIEW E (2007)
Assessment of CASP7 predictions for template-based modeling targets
Jurgen Kopp et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Assessment of CASP7 structure predictions for template free targets
Ralf Jauch et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2007)
Statistical potential-based amino acid similarity matrices for aligning distantly related protein sequences
Yen Hock Tan et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2006)
Improving the quality of protein structure models by selecting from alignment alternatives
Ingolf Sommer et al.
BMC BIOINFORMATICS (2006)
A machine learning information retrieval approach to protein fold recognition
Jianlin Cheng et al.
BIOINFORMATICS (2006)
Servers for protein structure prediction
D Fischer
CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)
Sequence comparison and protein structure prediction
Roland L. Dunbrack
CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)
The effect of long-range interactions on the secondary structure formation of proteins
D Kihara
PROTEIN SCIENCE (2005)
Combining prediction of secondary structure and solvent accessibility in proteins
R Adamczak et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
The protein structure prediction problem could be solved using the current PDB library
Y Zhang et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2005)
Generalized protein structure prediction based on combination of fold-recognition with de novo folding and evaluation of models
A Kolinski et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
TM-align: a protein structure alignment algorithm based on the TM-score
Y Zhang et al.
NUCLEIC ACIDS RESEARCH (2005)
Alignment of protein sequences by their profiles
MA Marti-Renom et al.
PROTEIN SCIENCE (2004)
Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm
J Skolnick et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
Single-body residue-level knowledge-based energy score combined with sequence-profile and secondary structure information for fold recognition
HY Zhou et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2004)
Scoring profile-to-profiles sequence alignments
GL Wang et al.
PROTEIN SCIENCE (2004)
The interplay of fold recognition and experimental structure determination in structural genomics
I Friedberg et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2004)
The PDB is a covering set of small protein structures
D Kihara et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
LGA: a method for finding 3D similarities in protein structures
A Zemla
NUCLEIC ACIDS RESEARCH (2003)
Hidden Markov models that use predicted local structure for fold recognition: Alphabets of backbone geometry
R Karchin et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2003)
3D-Jury: a simple approach to improve protein structure predictions
K Ginalski et al.
BIOINFORMATICS (2003)
COMPASS: A tool for comparison of multiple protein alignments with assessment of statistical significance
R Sadreyev et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Overview of structural genomics: from structure to function
C Zhang et al.
CURRENT OPINION IN CHEMICAL BIOLOGY (2003)
PDB-REPRDB: a database of representative protein chains from the Protein Data Bank (PDB) in 2003
T Noguchi et al.
NUCLEIC ACIDS RESEARCH (2003)
MAMMOTH (Matching molecular models obtained from theory): An automated method for model comparison
AR Ortiz et al.
PROTEIN SCIENCE (2002)
A novel approach to local reliability of sequence alignments
M Schlosshauer et al.
BIOINFORMATICS (2002)
Predicting reliable regions in protein sequence alignments
M Cline et al.
BIOINFORMATICS (2002)
TOUCHSTONE:: An ab initio protein structure prediction method that uses threading-based tertiary restraints
D Kihara et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
Generalized comparative modeling (GENECOMP): A combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement
A Kolinski et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2001)
An overview of structural genomics
SK Burley
NATURE STRUCTURAL BIOLOGY (2000)
Structure-based evaluation of sequence comparison and fold recognition alignment accuracy
FS Domingues et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
Identification of related proteins on family, superfamily and fold level
E Lindahl et al.
JOURNAL OF MOLECULAR BIOLOGY (2000)
分享论文
