期刊
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS
卷 77, 期 -, 页码 128-132出版社
WILEY
DOI: 10.1002/prot.22499
关键词
homology detection; structure prediction; function prediction; CASP; HMM; hidden Markov model
Automated protein structure prediction is becoming a mainstream tool for biological research. This has been fueled by steady improvements of publicly available automated servers over the last decade, in particular their ability to build good homology models for an increasing number of targets by reliably detecting and aligning more and more remotely homologous templates. Here, we describe the three fully automated versions of the HHpred server that participated in the community-wide blind protein structure prediction competition CASP8. What makes HHpred unique is the combination of usability, short response times (typically under 15 min) and a model accuracy that is competitive with those of the best servers in CASP8.
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