期刊
PROGRESS IN BIOCHEMISTRY AND BIOPHYSICS
卷 37, 期 8, 页码 834-846出版社
CHINESE ACAD SCIENCES, INST BIOPHYSICS
DOI: 10.3724/SP.J.1206.2009.00151
关键词
high-throughput RNA sequencing; transcriptome; gene expression; data processing and analysis; bioinformatics
资金
- National Natural Science Foundation of China [60702002, 60721003, 30873464, 60905013]
- State Key Laboratory of Bioelectronics, Southeast University
With the rapid development of the next-generation sequencing (NGS) technology, high-throughput RNA sequencing or RNA-seq is becoming a key experimental approach in the study of gene expression and transcriptome. The overwhelming amount of RNA-seq data brings new opportunities and challenges for bioinformatics. The efficient and effective processing and analysis of RNA-seq data is becoming the bottleneck for turning the possibilities provided by the new technology into real scientific discovery. A general description of the typical RNA-seq protocol was given. A complete review of major methods and available software in the processing and analysis of RNA-seq data were presented, using the Illumina/Solexa platform as an example. Questions that are still open and awaiting further research are also discussed.
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