4.8 Article

Global view of enhancer-promoter interactome in human cells

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

The genomic landscape of cohesin-associated chromatin interactions

Laura E. DeMare et al.

GENOME RESEARCH (2013)

Review Biochemistry & Molecular Biology

Modification of Enhancer Chromatin: What, How, and Why?

Eliezer Calo et al.

MOLECULAR CELL (2013)

Article Biochemical Research Methods

Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts

Jonathan Goeke et al.

BIOINFORMATICS (2012)

Article Biochemistry & Molecular Biology

Cohesin regulates tissue-specific expression by stabilizing highly occupied cis-regulatory modules

Andre J. Faure et al.

GENOME RESEARCH (2012)

Article Biochemistry & Molecular Biology

GENCODE: The reference human genome annotation for The ENCODE Project

Jennifer Harrow et al.

GENOME RESEARCH (2012)

Article Multidisciplinary Sciences

The long-range interaction landscape of gene promoters

Amartya Sanyal et al.

NATURE (2012)

Article Multidisciplinary Sciences

The accessible chromatin landscape of the human genome

Robert E. Thurman et al.

NATURE (2012)

Review Cell Biology

Cohesin: genomic insights into controlling gene transcription and development

Dale Dorsett

CURRENT OPINION IN GENETICS & DEVELOPMENT (2011)

Editorial Material Cell Biology

Enhancers: From Developmental Genetics to the Genetics of Common Human Disease

Iain Williamson et al.

DEVELOPMENTAL CELL (2011)

Article Multidisciplinary Sciences

A unique chromatin signature uncovers early developmental enhancers in humans

Alvaro Rada-Iglesias et al.

NATURE (2011)

Article Multidisciplinary Sciences

Mapping and analysis of chromatin state dynamics in nine human cell types

Jason Ernst et al.

NATURE (2011)

Article Genetics & Heredity

CTCF-mediated functional chromatin interactome in pluripotent cells

Lusy Handoko et al.

NATURE GENETICS (2011)

Article Biochemistry & Molecular Biology

REDfly v3.0: toward a comprehensive database of transcriptional regulatory elements in Drosophila

Steven M. Gallo et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

Multiple enhancers ensure precision of gap gene-expression patterns in the Drosophila embryo

Michael W. Perry et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Article Biochemical Research Methods

Discover regulatory DNA elements using chromatin signatures and artificial neural network

Hiram A. Firpi et al.

BIOINFORMATICS (2010)

Article Cell & Tissue Engineering

An Oct4-Centered Protein Interaction Network in Embryonic Stem Cells

Debbie L. C. van den Berg et al.

CELL STEM CELL (2010)

Article Biochemistry & Molecular Biology

A CTCF-independent role for cohesin in tissue-specific transcription

Dominic Schmidt et al.

GENOME RESEARCH (2010)

Article Multidisciplinary Sciences

Widespread transcription at neuronal activity-regulated enhancers

Tae-Kyung Kim et al.

NATURE (2010)

Article Multidisciplinary Sciences

Mediator and cohesin connect gene expression and chromatin architecture

Michael H. Kagey et al.

NATURE (2010)

Review Biotechnology & Applied Microbiology

Genomics tools for unraveling chromosome architecture

Bas van Steensel et al.

NATURE BIOTECHNOLOGY (2010)

Article Multidisciplinary Sciences

Histone H3K27ac separates active from poised enhancers and predicts developmental state

Menno P. Creyghton et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biotechnology & Applied Microbiology

ChIA-PET tool for comprehensive chromatin interaction analysis with paired-end tag sequencing

Guoliang Li et al.

GENOME BIOLOGY (2010)

Article Multidisciplinary Sciences

Histone modifications at human enhancers reflect global cell-type-specific gene expression

Nathaniel D. Heintzman et al.

NATURE (2009)

Article Multidisciplinary Sciences

An oestrogen-receptor-α-bound human chromatin interactome

Melissa J. Fullwood et al.

NATURE (2009)

Review Multidisciplinary Sciences

Genomic views of distant-acting enhancers

Axel Visel et al.

NATURE (2009)

Article Multidisciplinary Sciences

ChIP-seq accurately predicts tissue-specific activity of enhancers

Axel Visel et al.

NATURE (2009)

Article Biochemistry & Molecular Biology

UniPROBE: an online database of protein binding microarray data on protein-DNA interactions

Daniel E. Newburger et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Shadow enhancers as a source of evolutionary novelty

Joung-Woo Hong et al.

SCIENCE (2008)

Article Biochemistry & Molecular Biology

JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update

Jan Christian Bryne et al.

NUCLEIC ACIDS RESEARCH (2008)

Review Biochemical Research Methods

An evaluation of 3C-based methods to capture DNA interactions

Marieke Simonis et al.

NATURE METHODS (2007)

Article Biochemistry & Molecular Biology

Genomic regulatory blocks encompass multiple neighboring genes and maintain conserved synteny in vertebrates

Hiroshi Kikuta et al.

GENOME RESEARCH (2007)

Article Biochemical Research Methods

Quantitative analysis of chromosome conformation capture assays (3C-qPCR)

Helene Hagege et al.

NATURE PROTOCOLS (2007)

Review Genetics & Heredity

Chromatin looping and the probability of transcription

QL Li et al.

TRENDS IN GENETICS (2006)

Article Biochemistry & Molecular Biology

TRANSFAC (R) and its module TRANSCompel (R): transcriptional gene regulation in eukaryotes

V. Matys et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Mapping cis-regulatory domains in the human genome using multi-species conservation of synteny

N Ahituv et al.

HUMAN MOLECULAR GENETICS (2005)

Article Genetics & Heredity

Integrative analysis of the cancer transcriptome

DR Rhodes et al.

NATURE GENETICS (2005)

Article Multidisciplinary Sciences

Promoter-proximal tethering elements regulate enhancer-promoter specificity in the Drosophila Antennapedia complex

VC Calhoun et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Multidisciplinary Sciences

Capturing chromosome conformation

J Dekker et al.

SCIENCE (2002)

Article Cell Biology

Enhancer-promoter specificity mediated by DPE or TATA core promoter motifs

JEF Butler et al.

GENES & DEVELOPMENT (2001)

Article Computer Science, Artificial Intelligence

Random forests

L Breiman

MACHINE LEARNING (2001)