4.8 Article

Evidence for a persistent microbial seed bank throughout the global ocean

出版社

NATL ACAD SCIENCES
DOI: 10.1073/pnas.1217767110

关键词

deep sequencing; microbial ecology; rare biosphere

资金

  1. Amazon Web Services (AWS)
  2. US Department of Energy [DE-AC02-06CH11357]
  3. National Institutes of Health [5T-32EB-009412]
  4. Natural Environment Research Council [ceh010010] Funding Source: researchfish

向作者/读者索取更多资源

Do bacterial taxa demonstrate clear endemism, like macroorganisms, or can one site's bacterial community recapture the total phylogenetic diversity of the world's oceans? Here we compare a deep bacterial community characterization from one site in the English Channel (L4-DeepSeq) with 356 datasets from the International Census of Marine Microbes (ICoMM) taken from around the globe (ranging from marine pelagic and sediment samples to sponge-associated environments). At the L4-DeepSeq site, increasing sequencing depth uncovers greater phylogenetic overlap with the global ICoMM data. This site contained 31.7-66.2% of operational taxonomic units identified in a given ICoMM biome. Extrapolation of this overlap suggests that 1.93 x 10(11) sequences from the L4 site would capture all ICoMM bacterial phylogenetic diversity. Current technology trends suggest this limit may be attainable within 3 y. These results strongly suggest the marine biosphere maintains a previously undetected, persistent microbial seed bank.

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