4.8 Article

Quantification of the relative roles of niche and neutral processes in structuring gastrointestinal microbiomes

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biology

A mathematical synthesis of niche and neutral theories in community ecology

Bart Haegeman et al.

JOURNAL OF THEORETICAL BIOLOGY (2011)

Article Multidisciplinary Sciences

Bacterial community assembly based on functional genes rather than species

Catherine Burke et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Ecology

The Unified Neutral Theory of Biodiversity and Biogeography at Age Ten

James Rosindell et al.

TRENDS IN ECOLOGY & EVOLUTION (2011)

Article Biochemical Research Methods

Picante: R tools for integrating phylogenies and ecology

Steven W. Kembel et al.

BIOINFORMATICS (2010)

Article Ecology

Different but equal: the implausible assumption at the heart of neutral theory

Drew W. Purves et al.

JOURNAL OF ANIMAL ECOLOGY (2010)

Article Multidisciplinary Sciences

Robust Computational Analysis of rRNA Hypervariable Tag Datasets

Maksim Sipos et al.

PLOS ONE (2010)

Article Multidisciplinary Sciences

Niche and neutral models predict asymptotically equivalent species abundance distributions in high-diversity ecological communities

Ryan A. Chisholm et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Combined niche and neutral effects in a microbial wastewater treatment community

Irina Dana Ofiteru et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Biotechnology & Applied Microbiology

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

Patrick D. Schloss et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)

Article Biochemical Research Methods

Infernal 1.0: inference of RNA alignments

Eric P. Nawrocki et al.

BIOINFORMATICS (2009)

Article Ecology

A general framework for neutral models of community dynamics

Omri Allouche et al.

ECOLOGY LETTERS (2009)

Review Ecology

The merging of community ecology and phylogenetic biology

Jeannine Cavender-Bares et al.

ECOLOGY LETTERS (2009)

Article Immunology

Reproducible Community Dynamics of the Gastrointestinal Microbiota following Antibiotic Perturbation

Dionysios A. Antonopoulos et al.

INFECTION AND IMMUNITY (2009)

Article Biochemistry & Molecular Biology

The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

J. R. Cole et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Multidisciplinary Sciences

Gene-centric metagenomics of the fiber-adherent bovine rumen microbiome reveals forage specific glycoside hydrolases

Jennifer M. Brulc et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Multidisciplinary Sciences

Inferring species interactions in tropical forests

Igor Volkov et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)

Article Ecology

Phylogeny, niches, and relative abundance in natural communities

Colleen K. Kelly et al.

ECOLOGY (2008)

Article Multidisciplinary Sciences

Neutral metacommunity models predict fish diversity patterns in Mississippi-Missouri basin

Rachata Muneepeerakul et al.

NATURE (2008)

Article Multidisciplinary Sciences

Symbiotic gut microbes modulate human metabolic phenotypes

Min Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Review Ecology

Phylogenetic analysis of community assembly and structure over space and time

Brent C. Emerson et al.

TRENDS IN ECOLOGY & EVOLUTION (2008)

Article Genetics & Heredity

Exploring Microbial Diversity and Taxonomy Using SSU rRNA Hypervariable Tag Sequencing

Susan M. Huse et al.

PLOS GENETICS (2008)

Article Biochemistry & Molecular Biology

SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB

Elmar Pruesse et al.

NUCLEIC ACIDS RESEARCH (2007)

Article Biology

Concurrent niche and neutral processes in the competition-colonization model of species coexistence

Marc William Cadotte

PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2007)

Article Microbiology

Neutral assembly of bacterial communities

Stephen Woodcock et al.

FEMS MICROBIOLOGY ECOLOGY (2007)

Review Multidisciplinary Sciences

An ecological and evolutionary perspective on human-microbe mutualism and disease

Les Dethlefsen et al.

NATURE (2007)

Article Multidisciplinary Sciences

The Human Microbiome Project

Peter J. Turnbaugh et al.

NATURE (2007)

Article Biology

The zero-sum assumption in neutral biodiversity theory

Rampal S. Etienne et al.

JOURNAL OF THEORETICAL BIOLOGY (2007)

Article Biotechnology & Applied Microbiology

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

Qiong Wang et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)

Article Ecology

A comparison of taxon co-occurrence patterns for macro- and microorganisms

M. Claire Horner-Devine et al.

ECOLOGY (2007)

Article Ecology

A niche for neutrality

Peter B. Adler et al.

ECOLOGY LETTERS (2007)

Article Biotechnology & Applied Microbiology

A high utility integrated map of the pig genome

Sean J. Humphray et al.

GENOME BIOLOGY (2007)

Article Ecology

On plotting species abundance distributions

John S. Gray et al.

JOURNAL OF ANIMAL ECOLOGY (2006)

Article Ecology

Reconciling niche and neutrality: the continuum hypothesis

D Gravel et al.

ECOLOGY LETTERS (2006)

Review Multidisciplinary Sciences

Host-bacterial mutualism in the human intestine

F Bäckhed et al.

SCIENCE (2005)

Review Ecology

Neutral theory and community ecology

J Chave

ECOLOGY LETTERS (2004)

Article Multidisciplinary Sciences

Niche tradeoffs, neutrality, and community structure: A stochastic theory of resource competition, invasion, and community assembly

D Tilman

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)

Review Ecology

Plant coexistence and the niche

J Silvertown

TRENDS IN ECOLOGY & EVOLUTION (2004)

Letter Biochemistry & Molecular Biology

Percent sequence identity: The need to be explicit

ACW May

STRUCTURE (2004)

Article Multidisciplinary Sciences

A test of the unified neutral theory of biodiversity

BJ McGill

NATURE (2003)

Article Physics, Fluids & Plasmas

Critical and near-critical branching processes

C Adami et al.

PHYSICAL REVIEW E (2002)

Review Multidisciplinary Sciences

Ecology - Neutral macroecology

G Bell

SCIENCE (2001)

Article Ecology

The distribution of abundance in neutral communities

G Bell

AMERICAN NATURALIST (2000)