4.6 Article

The Agassiz's desert tortoise genome provides a resource for the conservation of a threatened species

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemistry & Molecular Biology

Expression, Distribution and Role of Aquaporin Water Channels in Human and Animal Stomach and Intestines

Cui Zhu et al.

INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2016)

Article Biochemical Research Methods

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

Felipe A. Simao et al.

BIOINFORMATICS (2015)

Article Cell Biology

Third Report on Chicken Genes and Chromosomes 2015

Michael Schmid et al.

CYTOGENETIC AND GENOME RESEARCH (2015)

Article Biochemistry & Molecular Biology

Tree of Life Reveals Clock-Like Speciation and Diversification

S. Blair Hedges et al.

MOLECULAR BIOLOGY AND EVOLUTION (2015)

Article Multidisciplinary Sciences

Rapid molecular evolution across amniotes of the IIS/TOR network

Suzanne E. McGaugh et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2015)

Article Cell Biology

Insights into the Evolution of Longevity from the Bowhead Whale Genome

Michael Keane et al.

CELL REPORTS (2015)

Article Biochemistry & Molecular Biology

UniProt: a hub for protein information

Alex Bateman et al.

NUCLEIC ACIDS RESEARCH (2015)

Article Biochemical Research Methods

Trimmomatic: a flexible trimmer for Illumina sequence data

Anthony M. Bolger et al.

BIOINFORMATICS (2014)

Article Biochemical Research Methods

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

Alexandros Stamatakis

BIOINFORMATICS (2014)

Review Evolutionary Biology

How and why should we implement genomics into conservation?

Barry J. McMahon et al.

EVOLUTIONARY APPLICATIONS (2014)

Article Biochemistry & Molecular Biology

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads

Rei Kajitani et al.

GENOME RESEARCH (2014)

Article Multidisciplinary Sciences

Three crocodilian genomes reveal ancestral patterns of evolution among archosaurs

Richard E. Green et al.

SCIENCE (2014)

Article Multidisciplinary Sciences

Comparative genomics reveals insights into avian genome evolution and adaptation

Guojie Zhang et al.

SCIENCE (2014)

Article Biochemical Research Methods

STAR: ultrafast universal RNA-seq aligner

Alexander Dobin et al.

BIOINFORMATICS (2013)

Article Biotechnology & Applied Microbiology

L_RNA_scaffolder: scaffolding genomes with transcripts

Wei Xue et al.

BMC GENOMICS (2013)

Article Multidisciplinary Sciences

The Embryonic Transcriptome of the Red-Eared Slider Turtle (Trachemys scripta)

Nicholas J. Kaplinsky et al.

PLOS ONE (2013)

Article Multidisciplinary Sciences

The Burmese python genome reveals the molecular basis for extreme adaptation in snakes

Todd A. Castoe et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)

Article Biotechnology & Applied Microbiology

Population genomics of the endangered giant Galapagos tortoise

Etienne Loire et al.

GENOME BIOLOGY (2013)

Article Biochemical Research Methods

Scaffolding pre-assembled contigs using SSPACE

Marten Boetzer et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

Making whole genome multiple alignments usable for biologists

Daniel Blankenberg et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

FLASH: fast length adjustment of short reads to improve genome assemblies

Tanja Magoc et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

Carson Holt et al.

BMC BIOINFORMATICS (2011)

Article Biochemical Research Methods

PHAST and RPHAST: phylogenetic analysis with space/time models

Melissa J. Hubisz et al.

BRIEFINGS IN BIOINFORMATICS (2011)

Article Multidisciplinary Sciences

The genome of the green anole lizard and a comparative analysis with birds and mammals

Jessica Alfoeldi et al.

NATURE (2011)

Article Biotechnology & Applied Microbiology

Full-length transcriptome assembly from RNA-Seq data without a reference genome

Manfred G. Grabherr et al.

NATURE BIOTECHNOLOGY (2011)

Article Genetics & Heredity

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Mark A. DePristo et al.

NATURE GENETICS (2011)

Article Biochemistry & Molecular Biology

g:Profiler-a web server for functional interpretation of gene lists (2011 update)

Jueri Reimand et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Multidisciplinary Sciences

REVIGO Summarizes and Visualizes Long Lists of Gene Ontology Terms

Fran Supek et al.

PLOS ONE (2011)

Article Multidisciplinary Sciences

Relaxed selection is a precursor to the evolution of phenotypic plasticity

Brendan G. Hunt et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)

Review Ecology

Peto's Paradox: evolution's prescription for cancer prevention

Aleah F. Caulin et al.

TRENDS IN ECOLOGY & EVOLUTION (2011)

Article Mathematical & Computational Biology

Ensembl BioMarts: a hub for data retrieval across taxonomic space

Rhoda J. Kinsella et al.

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2011)

Article Biochemical Research Methods

BEDTools: a flexible suite of utilities for comparing genomic features

Aaron R. Quinlan et al.

BIOINFORMATICS (2010)

Article Biodiversity Conservation

Defining population structure for the Mojave desert tortoise

Bridgette E. Hagerty et al.

CONSERVATION GENETICS (2010)

Article Biochemistry & Molecular Biology

ABySS: A parallel assembler for short read sequence data

Jared T. Simpson et al.

GENOME RESEARCH (2009)

Article Biochemistry & Molecular Biology

Assessing the gene space in draft genomes

Genis Parra et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biochemical Research Methods

Using native and syntenically mapped cDNA alignments to improve de novo gene finding

Mario Stanke et al.

BIOINFORMATICS (2008)

Article Biochemical Research Methods

Large-scale trends in the evolution of gene structures within 11 animal genomes

Mark Yandell et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Article Cell Biology

Repbase update, a database of eukaryotic repetitive elements

J Jurka et al.

CYTOGENETIC AND GENOME RESEARCH (2005)

Article Biochemistry & Molecular Biology

Aligning multiple genomic sequences with the threaded blockset aligner

M Blanchette et al.

GENOME RESEARCH (2004)

Article Biochemical Research Methods

Gene finding in novel genomes

I Korf

BMC BIOINFORMATICS (2004)

Article Multidisciplinary Sciences

Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes

WJ Kent et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Article Biochemistry & Molecular Biology

BLAT - The BLAST-like alignment tool

WJ Kent

GENOME RESEARCH (2002)

Article Multidisciplinary Sciences

Mutation rates in mammalian genomes

S Kumar et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Article Biochemistry & Molecular Biology

Molecular clocks in reptiles: Life history influences rate of molecular evolution

L Bromham

MOLECULAR BIOLOGY AND EVOLUTION (2002)