相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Strand-specific RNA-Seq reveals widespread and developmentally regulated transcription of natural antisense transcripts in Plasmodium falciparum
T. Nicolai Siegel et al.
BMC GENOMICS (2014)
Pfam: the protein families database
Robert D. Finn et al.
NUCLEIC ACIDS RESEARCH (2014)
Genome-wide regulatory dynamics of translation in the Plasmodium falciparum asexual blood stages
Florence Caro et al.
ELIFE (2014)
Differential analysis of gene regulation at transcript resolution with RNA-seq
Cole Trapnell et al.
NATURE BIOTECHNOLOGY (2013)
Polysome profiling reveals translational control of gene expression in the human malaria parasite Plasmodium falciparum
Evelien M. Bunnik et al.
GENOME BIOLOGY (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
REAPR: a universal tool for genome assembly evaluation
Martin Hunt et al.
GENOME BIOLOGY (2013)
De novo reconstruction of the Toxoplasma gondii transcriptome improves on the current genome annotation and reveals alternatively spliced transcripts and putative long non-coding RNAs
Musa A. Hassan et al.
BMC GENOMICS (2012)
Identification and Properties of 1,119 Candidate LincRNA Loci in the Drosophila melanogaster Genome
Robert S. Young et al.
GENOME BIOLOGY AND EVOLUTION (2012)
Systematic identification of long noncoding RNAs expressed during zebrafish embryogenesis
Andrea Pauli et al.
GENOME RESEARCH (2012)
Long noncoding RNAs in C. elegans
Jin-Wu Nam et al.
GENOME RESEARCH (2012)
Characterization of Toxoplasma gondii 5′ UTR with Encyclopedic TSS Information
J. Yamagishi et al.
JOURNAL OF PARASITOLOGY (2012)
Comparative Genomics of the Apicomplexan Parasites Toxoplasma gondii and Neospora caninum: Coccidia Differing in Host Range and Transmission Strategy
Adam James Reid et al.
PLOS PATHOGENS (2012)
Toward almost closed genomes with GapFiller
Marten Boetzer et al.
GENOME BIOLOGY (2012)
Exploiting Oxytricha trifallax nanochromosomes to screen for non-coding RNA genes
Seolkyoung Jung et al.
NUCLEIC ACIDS RESEARCH (2011)
RATT: Rapid Annotation Transfer Tool
Thomas D. Otto et al.
NUCLEIC ACIDS RESEARCH (2011)
A global transcriptional analysis of Plasmodium falciparum malaria reveals a novel family of telomere-associated lncRNAs
Kate M. Broadbent et al.
GENOME BIOLOGY (2011)
Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology
Thomas D. Otto et al.
BIOINFORMATICS (2010)
Long non-coding RNAs: insights into functions
Tim R. Mercer et al.
NATURE REVIEWS GENETICS (2009)
The proteome of Toxoplasma gondii: integration with the genome provides novel insights into gene expression and annotation
Dong Xia et al.
GENOME BIOLOGY (2008)
A conserved U-rich RNA region implicated in regulation of translation in Plasmodium female gametocytes
Joanna A. M. Braks et al.
NUCLEIC ACIDS RESEARCH (2008)
ToxoDB: an integrated Toxoplasma gondii database resource
Bindu Gajria et al.
NUCLEIC ACIDS RESEARCH (2008)
CPC: assess the protein-coding potential of transcripts using sequence features and support vector machine
Lei Kong et al.
NUCLEIC ACIDS RESEARCH (2007)
Epigenomic modifications predict active promoters and gene structure in Toxoplasma gondii
Mathieu Gissot et al.
PLOS PATHOGENS (2007)
A novel class of developmentally regulated noncoding RNAs in Leishmania
Carole Dumas et al.
EUKARYOTIC CELL (2006)
Gene prediction in eukaryotes with a generalized hidden Markov model that uses hints from external sources
M Stanke et al.
BMC BIOINFORMATICS (2006)
JIGSAW: integration of multiple sources of evidence for gene prediction
JE Allen et al.
BIOINFORMATICS (2005)
ACT: the Artemis comparison tool
TJ Carver et al.
BIOINFORMATICS (2005)
Toxoplasma gondii:: the model apicomplexan
K Kim et al.
INTERNATIONAL JOURNAL FOR PARASITOLOGY (2004)
Widespread distribution of antisense transcripts in the Plasmodium falciparum genome
AM Gunasekera et al.
MOLECULAR AND BIOCHEMICAL PARASITOLOGY (2004)
TigrScan and GlimmerHMM:: two open source ab initio eukaryotic gene-finders
WH Majoros et al.
BIOINFORMATICS (2004)
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
BJ Haas et al.
NUCLEIC ACIDS RESEARCH (2003)
Gene prediction with a hidden Markov model and a new intron submodel
Mario Stanke et al.
BIOINFORMATICS (2003)
The malaria parasite Plasmodium falciparum encodes members of the Puf RNA-binding protein family with conserved RNA binding activity
LW Cui et al.
NUCLEIC ACIDS RESEARCH (2002)
Toxoplasma gondii eukaryotic translation initiation factor 4A associated with tachyzoite virulence is down-regulated in the bradyzoite stage
MH Gastens et al.
INTERNATIONAL JOURNAL FOR PARASITOLOGY (2002)
Untranslated regions of mRNAs
Flavio Mignone et al.
GENOME BIOLOGY (2002)
Characterisation of global protein expression by two-dimensional electrophoresis and mass spectrometry: proteomics of Toxoplasma gondii
AM Cohen et al.
INTERNATIONAL JOURNAL FOR PARASITOLOGY (2002)
InterProScan - an integration platform for the signature-recognition methods in InterPro
EM Zdobnov et al.
BIOINFORMATICS (2001)
Toxoplasma gondii infection in the United States:: Seroprevalence and risk factors
JL Jones et al.
AMERICAN JOURNAL OF EPIDEMIOLOGY (2001)
Artemis: sequence visualization and annotation
K Rutherford et al.
BIOINFORMATICS (2000)