4.6 Article

Data Concatenation, Bayesian Concordance and Coalescent-Based Analyses of the Species Tree for the Rapid Radiation of Triturus Newts

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Evolutionary Biology

The modality of nine Triturus newt hybrid zones assessed with nuclear, mitochondrial and morphological data

Jan W. Arntzen et al.

BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY (2014)

Article Biochemistry & Molecular Biology

Ignoring Heterozygous Sites Biases Phylogenomic Estimates of Divergence Times: Implications for the Evolutionary History of Microtus Voles

Heidi E. L. Lischer et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Bears in a Forest of Gene Trees: Phylogenetic Inference Is Complicated by Incomplete Lineage Sorting and Gene Flow

Verena E. Kutschera et al.

MOLECULAR BIOLOGY AND EVOLUTION (2014)

Article Biochemistry & Molecular Biology

Development, validation and high-throughput analysis of sequence markers in nonmodel species

P. Zielinski et al.

MOLECULAR ECOLOGY RESOURCES (2014)

Article Biochemistry & Molecular Biology

How low can you go? The effects of mutation rate on the accuracy of species-tree estimation

Hayley C. Lanier et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2014)

Article Evolutionary Biology

The Influence of Gene Flow on Species Tree Estimation: A Simulation Study

Adam D. Leache et al.

SYSTEMATIC BIOLOGY (2014)

Review Ecology

High-Throughput Genomic Data in Systematics and Phylogenetics

Emily Moriarty Lemmon et al.

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 44 (2013)

Article Biochemistry & Molecular Biology

Species tree reconstruction of a poorly resolved clade of salamanders (Ambystomatidae) using multiple nuclear loci

Joshua S. Williams et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

A multimarker phylogeography of crested newts (Triturus cristatus superspecies) reveals cryptic species

B. Wielstra et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2013)

Article Biochemistry & Molecular Biology

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

Alexei J. Drummond et al.

MOLECULAR BIOLOGY AND EVOLUTION (2012)

Editorial Material Evolutionary Biology

The Promises and Pitfalls of Next-Generation Sequencing Data in Phylogeography

Bryan Carstens et al.

SYSTEMATIC BIOLOGY (2012)

Article Evolutionary Biology

The Accuracy of Species Tree Estimation under Simulation: A Comparison of Methods

Adam D. Leache et al.

SYSTEMATIC BIOLOGY (2011)

Review Ecology

Phylogenetic Insights on Adaptive Radiation

Richard E. Glor

ANNUAL REVIEW OF ECOLOGY, EVOLUTION, AND SYSTEMATICS, VOL 41 (2010)

Article Biochemical Research Methods

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

Bret R. Larget et al.

BIOINFORMATICS (2010)

Article Biochemistry & Molecular Biology

Bayesian Inference of Species Trees from Multilocus Data

Joseph Heled et al.

MOLECULAR BIOLOGY AND EVOLUTION (2010)

Article Biochemical Research Methods

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

P. Librado et al.

BIOINFORMATICS (2009)

Editorial Material Ecology

IS A NEW AND GENERAL THEORY OF MOLECULAR SYSTEMATICS EMERGING?

Scott V. Edwards

EVOLUTION (2009)

Article Biochemistry & Molecular Biology

Multiple nuclear and mitochondrial genes resolve the branching order of a rapid radiation of crested newts (Triturus, Salamandridae)

G. Espregueira Themudo et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)

Review Ecology

Gene tree discordance, phylogenetic inference and the multispecies coalescent

James H. Degnan et al.

TRENDS IN ECOLOGY & EVOLUTION (2009)

Article Biochemical Research Methods

BatchPrimer3: A high throughput web application for PCR and sequencing primer design

Frank M. You et al.

BMC BIOINFORMATICS (2008)

Article Biochemical Research Methods

Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations

Jukka Corander et al.

BMC BIOINFORMATICS (2008)

Article Biochemistry & Molecular Biology

Does gene flow destroy phylogenetic signal? The performance of three methods for estimating species phylogenies in the presence of gene flow

Andrew J. Eckert et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2008)

Article Evolutionary Biology

Multilocus phylogenetics of a rapid radiation in the genus thomomys (Rodentia : Geomyidae)

Natalia M. Belfiore et al.

SYSTEMATIC BIOLOGY (2008)

Review Ecology

Deciphering ancient rapid radiations

James B. Whitfield et al.

TRENDS IN ECOLOGY & EVOLUTION (2007)

Article Multidisciplinary Sciences

High-resolution species trees without concatenation

Scott V. Edwards et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Evolutionary Biology

Inconsistency of phylogenetic estimates from concatenated data under coalescence

Laura Salter Kubatko et al.

SYSTEMATIC BIOLOGY (2007)

Review Biochemistry & Molecular Biology

The incomplete natural history of mitochondria

JWO Ballard et al.

MOLECULAR ECOLOGY (2004)

Article Biochemistry & Molecular Biology

DISTRUCT: a program for the graphical display of population structure

NA Rosenberg

MOLECULAR ECOLOGY NOTES (2004)