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Sean Powell et al.
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RefSeq microbial genomes database: new representation and annotation strategy
Tatiana Tatusova et al.
NUCLEIC ACIDS RESEARCH (2014)
PATRIC, the bacterial bioinformatics database and analysis resource
Alice R. Wattam et al.
NUCLEIC ACIDS RESEARCH (2014)
Phylogenomic clustering for selecting non-redundant genomes for comparative genomics
Gabriel Moreno-Hagelsieb et al.
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Functional and evolutionary implications of gene orthology
Toni Gabaldon et al.
NATURE REVIEWS GENETICS (2013)
KEGG OC: a large-scale automatic construction of taxonomy-based ortholog clusters
Akihiro Nakaya et al.
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OrtholugeDB: a bacterial and archaeal orthology resource for improved comparative genomic analysis
Matthew D. Whiteside et al.
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OrthoDB: a hierarchical catalog of animal, fungal and bacterial orthologs
Robert M. Waterhouse et al.
NUCLEIC ACIDS RESEARCH (2013)
The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification
Cyrus Afrasiabi et al.
NUCLEIC ACIDS RESEARCH (2013)
Improving Microbial Genome Annotations in an Integrated Database Context
I-Min A. Chen et al.
PLOS ONE (2013)
Toward community standards in the quest for orthologs
Christophe Dessimoz et al.
BIOINFORMATICS (2012)
On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report
Paul D. Thomas et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
The Ortholog Conjecture Is Untestable by the Current Gene Ontology but Is Supported by RNA Sequencing Data
Xiaoshu Chen et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Resolving the Ortholog Conjecture: Orthologs Tend to Be Weakly, but Significantly, More Similar in Function than Paralogs
Adrian M. Altenhoff et al.
PLOS COMPUTATIONAL BIOLOGY (2012)
Adaptive seeds tame genomic sequence comparison
Szymon M. Kielbasa et al.
GENOME RESEARCH (2011)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
Albert J. Vilella et al.
GENOME RESEARCH (2009)
The RAST server: Rapid annotations using subsystems technology
Ramy K. Aziz et al.
BMC GENOMICS (2008)
Choosing BLAST options for better detection of orthologs as reciprocal best hits
Gabriel Moreno-Hagelsieb et al.
BIOINFORMATICS (2008)
TreeFam: 2008 update
Jue Ruan et al.
NUCLEIC ACIDS RESEARCH (2008)
Assessment of phylogenomic and orthology approaches for phylogenetic inference
B. E. Dutilh et al.
BIOINFORMATICS (2007)
Composition-based statistics and translated nucleotide searches:: Improving the TBLASTN module of BLAST
E. Michael Gertz et al.
BMC BIOLOGY (2006)
Retrieval accuracy, statistical significance and compositional similarity in protein sequence database searches
Yi-Kuo Yu et al.
NUCLEIC ACIDS RESEARCH (2006)
Roundup: a multi-genome repository of orthologs and evolutionary distances
Todd F. DeLuca et al.
BIOINFORMATICS (2006)
Automatic clustering of orthologs and inparalogs shared by multiple proteomes
Andrey Alexeyenko et al.
BIOINFORMATICS (2006)
Protein database searches using compositionally adjusted substitution matrices
SF Altschul et al.
FEBS JOURNAL (2005)
An adaptive radiation model for the origin of new gene functions
MP Francino
NATURE GENETICS (2005)
Conservation of adjacency as evidence of paralogous operons
SC Janga et al.
NUCLEIC ACIDS RESEARCH (2004)
The COG database: an updated version includes eukaryotes
RL Tatusov et al.
BMC BIOINFORMATICS (2003)
Automated annotation of microbial proteomes in SWISS-PROT
A Gattiker et al.
COMPUTATIONAL BIOLOGY AND CHEMISTRY (2003)
The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003
B Boeckmann et al.
NUCLEIC ACIDS RESEARCH (2003)
Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements
AA Schäffer et al.
NUCLEIC ACIDS RESEARCH (2001)
GeneMarkS: a self-training method for prediction of gene starts in microbial genomes. Implications for finding sequence motifs in regulatory regions
J Besemer et al.
NUCLEIC ACIDS RESEARCH (2001)
NCBI's LocusLink and RefSeq
DR Maglott et al.
NUCLEIC ACIDS RESEARCH (2000)