4.6 Article

Characterization of Natural Antisense Transcript, Sclerotia Development and Secondary Metabolism by Strand-Specific RNA Sequencing of Aspergillus flavus

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biotechnology & Applied Microbiology

Transcriptome analysis of the filamentous fungus Aspergillus nidulans directed to the global identification of promoters

Christopher Sibthorp et al.

BMC GENOMICS (2013)

Review Biochemistry & Molecular Biology

Natural antisense transcripts in fungi

Michael E. Donaldson et al.

MOLECULAR MICROBIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Submerged Conidiation and Product Formation by Aspergillus niger at Low Specific Growth Rates Are Affected in Aerial Developmental Mutants

Thomas R. Jorgensen et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2011)

Article Biochemical Research Methods

DEGseq: an R package for identifying differentially expressed genes from RNA-seq data

Likun Wang et al.

BIOINFORMATICS (2010)

Article Genetics & Heredity

SMURF: Genomic mapping of fungal secondary metabolite clusters

Nora Khaldi et al.

FUNGAL GENETICS AND BIOLOGY (2010)

Article Biochemistry & Molecular Biology

Strand-specific deep sequencing of the transcriptome

Ana P. Vivancos et al.

GENOME RESEARCH (2010)

Article Biochemistry & Molecular Biology

Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing

Bin Wang et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

SOAP2: an improved ultrafast tool for short read alignment

Ruiqiang Li et al.

BIOINFORMATICS (2009)

Review Genetics & Heredity

Genetic regulation of aflatoxin biosynthesis: From gene to genome

D. Ryan Georgianna et al.

FUNGAL GENETICS AND BIOLOGY (2009)

Review Cell Biology

Regulatory roles of natural antisense transcripts

Mohammad Ali Faghihi et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)

Article Biochemistry & Molecular Biology

Transcriptome analysis by strand-specific sequencing of complementary DNA

Dmitri Parkhomchuk et al.

NUCLEIC ACIDS RESEARCH (2009)

Article Biotechnology & Applied Microbiology

Rapid detection and curation of conserved DNA via enhanced-BLAT and EvoPrinterHD analysis

Amarendra S. Yavatkar et al.

BMC GENOMICS (2008)

Review Genetics & Heredity

The VeA regulatory system and its role in morphological and chemical development in fungi

Ana M. Calvo

FUNGAL GENETICS AND BIOLOGY (2008)

Article Multidisciplinary Sciences

Alternative isoform regulation in human tissue transcriptomes

Eric T. Wang et al.

NATURE (2008)

Article Multidisciplinary Sciences

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution

Brian T. Wilhelm et al.

NATURE (2008)

Article Biochemical Research Methods

Mapping and quantifying mammalian transcriptomes by RNA-Seq

Ali Mortazavi et al.

NATURE METHODS (2008)

Article Multidisciplinary Sciences

The transcriptional landscape of the yeast genome defined by RNA sequencing

Ugrappa Nagalakshmi et al.

SCIENCE (2008)

Article Biotechnology & Applied Microbiology

Cross-kingdom patterns of alternative splicing and splice recognition

Abigail M. McGuire et al.

GENOME BIOLOGY (2008)

Article Biotechnology & Applied Microbiology

Genes differentially expressed by Aspergillus flavus strains after loss of aflatoxin production by serial transfers

Perng-Kuang Chang et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2007)

Article Biotechnology & Applied Microbiology

Elucidation of veA-dependent genes associated with aflatoxin and sclerotial production in Aspergillus flavus by functional genomics

J. W. Cary et al.

APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2007)

Article Biochemistry & Molecular Biology

A network of multiple regulatory layers shapes gene expression in fission yeast

Daniel H. Lackner et al.

MOLECULAR CELL (2007)

Article Biotechnology & Applied Microbiology

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

Herman J. Pel et al.

NATURE BIOTECHNOLOGY (2007)

Article Biotechnology & Applied Microbiology

Molasses supplementation promotes conidiation but suppresses aflatoxin production by small sclerotial Aspergillus flavus

P. -K. Chang et al.

LETTERS IN APPLIED MICROBIOLOGY (2007)

Article Zoology

Sclerotial metamorphosis in filamentous fungi is induced by oxidative stress

Christos D. Georgiou et al.

INTEGRATIVE AND COMPARATIVE BIOLOGY (2006)

Article Infectious Diseases

Whole genome comparison of Aspergillus flavus and A-oryzae

G. A. Payne et al.

MEDICAL MYCOLOGY (2006)

Article Biochemistry & Molecular Biology

WEGO: a web tool for plotting GO annotations

Jia Ye et al.

NUCLEIC ACIDS RESEARCH (2006)

Article Biochemistry & Molecular Biology

Conservation and functional significance of gene topology in the genome of Caenorhabditis elegans

NS Chen et al.

GENOME RESEARCH (2006)

Article Biochemical Research Methods

The SWISS-MODEL workspace: a web-based environment for protein structure homology modelling

K Arnold et al.

BIOINFORMATICS (2006)

Article Multidisciplinary Sciences

The transcriptional landscape of the mammalian genome

P Carninci et al.

SCIENCE (2005)

Article Multidisciplinary Sciences

Antisense transcription in the mammalian transcriptome

S Katayama et al.

SCIENCE (2005)

Article Biotechnology & Applied Microbiology

Genome-wide prediction and identification of cis-natural antisense transcripts in Arabidopsis thaliana

XJ Wang et al.

GENOME BIOLOGY (2005)

Review Genetics & Heredity

RNAi-mediated pathways in the nucleus

MA Matzke et al.

NATURE REVIEWS GENETICS (2005)

Article Biochemistry & Molecular Biology

Non-coding RNA directed DNA demethylation of Sphk1 CpG island

T Imamura et al.

BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2004)

Article Multidisciplinary Sciences

The functions of animal microRNAs

V Ambros

NATURE (2004)

Article Multidisciplinary Sciences

Small interfering RNA-induced transcriptional gene silencing in human cells

KV Morris et al.

SCIENCE (2004)

Article Biotechnology & Applied Microbiology

veA is required for toxin and sclerotial production in Aspergillus parasiticus

AM Calvo et al.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2004)

Article Biochemistry & Molecular Biology

Over 20% of human transcripts might form sense-antisense pairs

JJ Chen et al.

NUCLEIC ACIDS RESEARCH (2004)

Article Biotechnology & Applied Microbiology

Antisense transcripts with rice full-length cDNAs

N Osato et al.

GENOME BIOLOGY (2004)

Review Biochemistry & Molecular Biology

Regulation of fungal gene expression via short open reading frames in the mRNA 5′untranslated region

C Vilela et al.

MOLECULAR MICROBIOLOGY (2003)

Article Biochemistry & Molecular Biology

SWISS-MODEL: an automated protein homology-modeling server

T Schwede et al.

NUCLEIC ACIDS RESEARCH (2003)

Review Cell Biology

Epigenetic gene regulation by noncoding RNAs

AA Andersen et al.

CURRENT OPINION IN CELL BIOLOGY (2003)

Review Biotechnology & Applied Microbiology

Untranslated regions of mRNAs

Flavio Mignone et al.

GENOME BIOLOGY (2002)