4.6 Article

Evolution of Tertiary Structure of Viral RNA Dependent Polymerases

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Review Biochemistry & Molecular Biology

Structural organization of viral RNA-dependent RNA polymerases

G. S. Shatskaya et al.

BIOCHEMISTRY-MOSCOW (2013)

Article Evolutionary Biology

Evolution at increased error rate leads to the coexistence of multiple adaptive pathways in an RNA virus

Laura Cabanillas et al.

BMC EVOLUTIONARY BIOLOGY (2013)

Article Biochemistry & Molecular Biology

Automatic comparison and classification of protein structures

Janne Ravantti et al.

JOURNAL OF STRUCTURAL BIOLOGY (2013)

Article Multidisciplinary Sciences

Structure of the full-length HCV IRES in solution

Julien Perard et al.

NATURE COMMUNICATIONS (2013)

Article Biochemical Research Methods

Purification, crystallization and preliminary X-ray diffraction analysis of the RNA-dependent RNA polymerase from Thosea asigna virus

Diego Ferrero et al.

ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS (2012)

Editorial Material Biology

Expanding networks of RNA virus evolution

Eugene V. Koonin et al.

BMC BIOLOGY (2012)

Article Biotechnology & Applied Microbiology

Diversity of murine norovirus in wild-rodent populations: species-specific associations suggest an ancient divergence

Donald B. Smith et al.

JOURNAL OF GENERAL VIROLOGY (2012)

Article Biochemistry & Molecular Biology

Structure-Based Inhibition of Norovirus RNA-Dependent RNA Polymerases

Eloise Mastrangelo et al.

JOURNAL OF MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

HIV-1 reverse transcriptase complex with DNA and nevirapine reveals non-nucleoside inhibition mechanism

Kalyan Das et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Article Biochemistry & Molecular Biology

Molecular basis for RNA polymerization by Qβ replicase

Daijiro Takeshita et al.

NATURE STRUCTURAL & MOLECULAR BIOLOGY (2012)

Article Gastroenterology & Hepatology

Evidence for separation of HCV subtype 1a into two distinct clades

B. E. Pickett et al.

JOURNAL OF VIRAL HEPATITIS (2011)

Review Virology

What Does Virus Evolution Tell Us about Virus Origins?

Edward C. Holmes

JOURNAL OF VIROLOGY (2011)

Article Virology

The genome-linked protein VPg of vertebrate viruses - a multifaceted protein

Ian Goodfellow

CURRENT OPINION IN VIROLOGY (2011)

Article Virology

Common origins and host-dependent diversity of plant and animal viromes

Valerian V. Dolja et al.

CURRENT OPINION IN VIROLOGY (2011)

Editorial Material Virology

Order to the Viral Universe

Mart Krupovic et al.

JOURNAL OF VIROLOGY (2010)

Article Biochemistry & Molecular Biology

Dali server: conservation mapping in 3D

Liisa Holm et al.

NUCLEIC ACIDS RESEARCH (2010)

Article Multidisciplinary Sciences

Structure of the Qβ replicase, an RNA-dependent RNA polymerase consisting of viral and host proteins

Rune T. Kidmose et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Assembly of Qβ viral RNA polymerase with host translational elongation factors EF-Tu and -Ts

Daijiro Takeshita et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Article Multidisciplinary Sciences

Structural basis for active site closure by the poliovirus RNA-dependent RNA polymerase

Peng Gong et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)

Review Biochemistry & Molecular Biology

Divergence date estimation and a comprehensive molecular tree of extant cetaceans

Michael R. McGowen et al.

MOLECULAR PHYLOGENETICS AND EVOLUTION (2009)

Article Biochemistry & Molecular Biology

Structure is three to ten times more conserved than sequence-A study of structural response in protein cores

Kristoffer Illergard et al.

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2009)

Article Biochemistry & Molecular Biology

Structural insights into mechanisms of catalysis and inhibition in Norwalk virus polymerase

Dmitry F. Zamyatkin et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2008)

Review Microbiology

The Big Bang of picorna-like virus evolution antedates the radiation of eukaryotic supergroups

Eugene V. Koonin et al.

NATURE REVIEWS MICROBIOLOGY (2008)

Article Biochemistry & Molecular Biology

Mechanism for Coordinated RNA Packaging and Genome Replication by Rotavirus Polymerase VP1

Xiaohui Lu et al.

STRUCTURE (2008)

Article Multidisciplinary Sciences

Activation mechanism of a noncanonical RNA-dependent RNA polymerase

Damia Garriga et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Sequential structures provide insights into the fidelity of RNA replication

Cristina Ferrer-Orta et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

The structure of a birnavirus polymerase reveals a distinct active site topology

Junhua Pan et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Virology

Structural and functional characterization of sapovirus RNA-dependent RNA polymerase

Stephen W. B. Fullerton et al.

JOURNAL OF VIROLOGY (2007)

Article Biochemistry & Molecular Biology

The structure of an RNAi polymerase links RNA silencing and transcription

Paula S. Salgado et al.

PLOS BIOLOGY (2006)

Article Biochemical Research Methods

Tools for integrated sequence-structure analysis with UCSF Chimera

Elaine C. Meng et al.

BMC BIOINFORMATICS (2006)

Article Biochemistry & Molecular Biology

Expresso: automatic incorporation of structural information in multiple sequence alignments using 3D-coffee

Fabrice Armougom et al.

NUCLEIC ACIDS RESEARCH (2006)

Review Biochemistry & Molecular Biology

A comparison of viral RNA-dependent RNA polymerases

C Ferrer-Orta et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2006)

Article Biochemistry & Molecular Biology

What does structure tell us about virus evolution?

DH Bamford et al.

CURRENT OPINION IN STRUCTURAL BIOLOGY (2005)

Review Biochemical Research Methods

Structural evolution of the protein kinase-like superfamily

ED Scheeff et al.

PLOS COMPUTATIONAL BIOLOGY (2005)

Article Biochemical Research Methods

ProtTest: selection of best-fit models of protein evolution

F Abascal et al.

BIOINFORMATICS (2005)

Article Evolutionary Biology

Bayesian phylogenetic analysis of combined data

JAA Nylander et al.

SYSTEMATIC BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Structure of foot-and-mouth disease virus RNA-dependent RNA polymerase and its complex with a template-primer RNA

C Ferrer-Orta et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2004)

Article Chemistry, Multidisciplinary

UCSF chimera - A visualization system for exploratory research and analysis

EF Pettersen et al.

JOURNAL OF COMPUTATIONAL CHEMISTRY (2004)

Review Biotechnology & Applied Microbiology

Initiation of viral RNA-dependent RNA polymerization

AA van Dijk et al.

JOURNAL OF GENERAL VIROLOGY (2004)

Article Biochemical Research Methods

MrBayes 3: Bayesian phylogenetic inference under mixed models

F Ronquist et al.

BIOINFORMATICS (2003)

Review Biochemistry & Molecular Biology

A structural and primary sequence comparison of the viral RNA-dependent RNA polymerases

JA Bruenn

NUCLEIC ACIDS RESEARCH (2003)

Article Biochemistry & Molecular Biology

RNA synthesis in a cage -: Structural studies of reovirus polymerase λ3

YZ Tao et al.

Article Biochemistry & Molecular Biology

The palm subdomain-based active site is internally permuted in viral RNA-dependent RNA polymerases of an ancient lineage

AE Gorbalenya et al.

JOURNAL OF MOLECULAR BIOLOGY (2002)

Article Multidisciplinary Sciences

Structure of HIV-2 reverse transcriptase at 2.35-Å resolution and the mechanism of resistance to non-nucleoside inhibitors

J Ren et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2002)

Review Microbiology

The origin of DNA genomes and DNA replication proteins

P Forterre

CURRENT OPINION IN MICROBIOLOGY (2002)

Article Biochemistry & Molecular Biology

Crystal structures of active and inactive conformations of a caliciviral RNA-dependent RNA polymerase

KKS Ng et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2002)

Article Biochemical Research Methods

MRBAYES: Bayesian inference of phylogenetic trees

JP Huelsenbeck et al.

BIOINFORMATICS (2001)

Article Multidisciplinary Sciences

A mechanism for initiating RNA-dependent RNA polymerization

SJ Butcher et al.

NATURE (2001)

Article Biochemistry & Molecular Biology

The Protein Data Bank

HM Berman et al.

NUCLEIC ACIDS RESEARCH (2000)