4.6 Article

RNA CoMPASS: A Dual Approach for Pathogen and Host Transcriptome Analysis of RNA-Seq Datasets

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Multidisciplinary Sciences

The landscape of viral expression and host gene fusion and adaptation in human cancer

Ka-Wei Tang et al.

NATURE COMMUNICATIONS (2013)

Review Microbiology

Dual RNA-seq of pathogen and host

Alexander J. Westermann et al.

NATURE REVIEWS MICROBIOLOGY (2012)

Article Biochemistry & Molecular Biology

NCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy

Kim D. Pruitt et al.

NUCLEIC ACIDS RESEARCH (2012)

Article Biochemistry & Molecular Biology

Integrative analysis of environmental sequences using MEGAN4

Daniel H. Huson et al.

GENOME RESEARCH (2011)

Letter Biotechnology & Applied Microbiology

PathSeq: software to identify or discover microbes by deep sequencing of human tissue

Aleksandar D. Kostic et al.

NATURE BIOTECHNOLOGY (2011)

Article Biochemistry & Molecular Biology

Isoform-level microRNA-155 target prediction using RNA-seq

Nan Deng et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

Mark D. Robinson et al.

BIOINFORMATICS (2010)

Article Biochemical Research Methods

De novo transcriptome assembly with ABySS

Inanc Birol et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

TopHat: discovering splice junctions with RNA-Seq

Cole Trapnell et al.

BIOINFORMATICS (2009)

Article Biochemical Research Methods

Empirical methods for controlling false positives and estimating confidence in ChIP-Seq peaks

David A. Nix et al.

BMC BIOINFORMATICS (2008)

Article Multidisciplinary Sciences

Topoisomerase levels determine chemotherapy response in vitro and in vivo

Darren J. Burgess et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)

Article Multidisciplinary Sciences

Clonal integration of a polyomavirus in human Merkel cell carcinoma

Huichen Feng et al.

SCIENCE (2008)

Article Medicine, General & Internal

Molecular diagnosis of Burkitt's lymphoma

Sandeep S. Dave et al.

NEW ENGLAND JOURNAL OF MEDICINE (2006)

Article Medicine, General & Internal

A biologic definition of Burkitt's lymphoma from transcriptional and genomic profiling

Michael Hummel et al.

NEW ENGLAND JOURNAL OF MEDICINE (2006)

Review Cell Biology

Transcriptional regulation and transformation by MYC proteins

S Adhikary et al.

NATURE REVIEWS MOLECULAR CELL BIOLOGY (2005)

Article Multidisciplinary Sciences

A global transcriptional regulatory role for c-Myc in Burkitt's lymphoma cells

ZR Li et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)

Review Biotechnology & Applied Microbiology

Pathogen discovery from human tissue by sequence-based computational subtraction

YH Xu et al.

GENOMICS (2003)

Article Biochemistry & Molecular Biology

The transcriptional program of a human B cell line in response to Myc

M Schuhmacher et al.

NUCLEIC ACIDS RESEARCH (2001)