相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony M. Bolger et al.
BIOINFORMATICS (2014)
HIV-1 Infection Leads to Increased Transcription of Human Endogenous Retrovirus HERV-K (HML-2) Proviruses In Vivo but Not to Increased Virion Production
Neeru Bhardwaj et al.
JOURNAL OF VIROLOGY (2014)
HIV-1 Interacts with Human Endogenous Retrovirus K (HML-2) Envelopes Derived from Human Primary Lymphocytes
Daria Brinzevich et al.
JOURNAL OF VIROLOGY (2014)
Regulation of the Human Endogenous Retrovirus K (HML-2) Transcriptome by the HIV-1 Tat Protein
Marta J. Gonzalez-Hernandez et al.
JOURNAL OF VIROLOGY (2014)
Unfixed Endogenous Retroviral Insertions in the Human Population
Emanuele Marchi et al.
JOURNAL OF VIROLOGY (2014)
Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration
Helga Thorvaldsdottir et al.
BRIEFINGS IN BIOINFORMATICS (2013)
Comprehensive Analysis of Human Endogenous Retrovirus Group HERV-W Locus Transcription in Multiple Sclerosis Brain Lesions by High-Throughput Amplicon Sequencing
Katja Schmitt et al.
JOURNAL OF VIROLOGY (2013)
MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
Human-specific endogenous retroviral insert serves as an enhancer for the schizophrenia-linked gene PRODH
Maria Suntsova et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2013)
Endogenous retrovirus-K promoter: a landing strip for inflammatory transcription factors?
Mamneet Manghera et al.
RETROVIROLOGY (2013)
TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions
Daehwan Kim et al.
GENOME BIOLOGY (2013)
HERV-K(HML-2), the best preserved family of HERVs: endogenization, expression, and implications in health and disease
Oliver Hohn et al.
FRONTIERS IN ONCOLOGY (2013)
ART: a next-generation sequencing read simulator
Weichun Huang et al.
BIOINFORMATICS (2012)
Immunotherapeutic Potential of Anti-Human Endogenous Retrovirus-K Envelope Protein Antibodies in Targeting Breast Tumors
Feng Wang-Johanning et al.
JNCI-JOURNAL OF THE NATIONAL CANCER INSTITUTE (2012)
Characterization of Human Endogenous Retroviral Elements in the Blood of HIV-1-Infected Individuals
Rafael Contreras-Galindo et al.
JOURNAL OF VIROLOGY (2012)
Fast gapped-read alignment with Bowtie 2
Ben Langmead et al.
NATURE METHODS (2012)
Primer3-new capabilities and interfaces
Andreas Untergasser et al.
NUCLEIC ACIDS RESEARCH (2012)
Human Endogenous Retrovirus Expression Is Inversely Associated with Chronic Immune Activation in HIV-1 Infection
Christopher E. Ormsby et al.
PLOS ONE (2012)
HIV infection and HERV expression: a review
Antoinette C. van der Kuyl
RETROVIROLOGY (2012)
HERV-H RNA is abundant in human embryonic stem cells and a precise marker for pluripotency
Federico A. Santoni et al.
RETROVIROLOGY (2012)
Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses
Moran N. Cabili et al.
GENES & DEVELOPMENT (2011)
Expression of the Human Endogenous Retrovirus (HERV) Group HML-2/HERV-K Does Not Depend on Canonical Promoter Elements but Is Regulated by Transcription Factors Sp1 and Sp3
Nina V. Fuchs et al.
JOURNAL OF VIROLOGY (2011)
Database resources of the National Center for Biotechnology Information
Eric W. Sayers et al.
NUCLEIC ACIDS RESEARCH (2011)
Identification of the protease cleavage sites in a reconstituted Gag polyprotein of an HERV-K(HML-2) element
Maja George et al.
RETROVIROLOGY (2011)
Identification, characterization, and comparative genomic distribution of the HERV-K (HML-2) group of human endogenous retroviruses
Ravi P. Subramanian et al.
RETROVIROLOGY (2011)
Improving RNA-Seq expression estimates by correcting for fragment bias
Adam Roberts et al.
GENOME BIOLOGY (2011)
Beneficial and detrimental effects of human endogenous retroviruses
Reinhard Kurth et al.
INTERNATIONAL JOURNAL OF CANCER (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Effects of Retroviruses on Host Genome Function
Patric Jern et al.
ANNUAL REVIEW OF GENETICS (2008)
Expression patterns of transcribed human endogenous retrovirus HERV-K(HML-2) loci in human tissues and the need for a HERV Transcriptome Project
Aline Flockerzi et al.
BMC GENOMICS (2008)
Human endogenous retrovirus K triggers an antigen-specific immune response in breast cancer patients
Feng Wang-Johanning et al.
CANCER RESEARCH (2008)
Endogenous retroviruses and cancer
K. Ruprecht et al.
CELLULAR AND MOLECULAR LIFE SCIENCES (2008)
Human Endogenous Retrovirus Family HERV-K(HML-2) RNA Transcripts Are Selectively Packaged into Retroviral Particles Produced by the Human Germ Cell Tumor Line Tera-1 and Originate Mainly from a Provirus on Chromosome 22q11.21
Klemens Ruprecht et al.
JOURNAL OF VIROLOGY (2008)
Hypermutation of an ancient human retrovirus by APOBEC3G
Young Nam Lee et al.
JOURNAL OF VIROLOGY (2008)
Mapping and quantifying mammalian transcriptomes by RNA-Seq
Ali Mortazavi et al.
NATURE METHODS (2008)
Selective and nonselective packaging of cellular RNAs in retrovirus particles
Samuel J. Rulli et al.
JOURNAL OF VIROLOGY (2007)
HIV-1 infection increases the expression of human endogenous retroviruses type K (HERV-K) in vitro
Rafael Contreras-Galindo et al.
AIDS RESEARCH AND HUMAN RETROVIRUSES (2007)
Detection of HERV-K(HML-2) viral RNA in plasma of HIV type 1-infected individuals
Rafael Contreras-Galindo et al.
AIDS RESEARCH AND HUMAN RETROVIRUSES (2006)
A new Real-Time-RT-PCR for quantitation of human endogenous retroviruses type K (HERV-K) RNA load in plasma samples:: Increased HERV-K RNA titers in HIV-1 patients with HAART non-suppressive regimens
Rafael Contreras-Galindo et al.
JOURNAL OF VIROLOGICAL METHODS (2006)
Functional human endogenous retroviral LTR transcription start sites are located between the R and U5 regions
E Kovalskaya et al.
VIROLOGY (2006)
Identification of a functional envelope protein from the HERV-K family of human endogenous retroviruses
M Dewannieux et al.
JOURNAL OF VIROLOGY (2005)
Genomewide screening reveals high levels of insertional polymorphism in the human endogenous retrovirus family HERV-K(HML2): Implications for present-day activity
R Belshaw et al.
JOURNAL OF VIROLOGY (2005)
How retroviruses select their genomes
V D'Souza et al.
NATURE REVIEWS MICROBIOLOGY (2005)
Multiple, linked human immunodeficiency virus type 1 drug resistance mutations in treatment-experienced patients are missed by standard genotype analysis
S Palmer et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Comprehensive analysis of human endogenous retrovirus transcriptional activity in human tissues with a retrovirus-specific microarray
W Seifarth et al.
JOURNAL OF VIROLOGY (2005)
CpG methylation directly regulates transcriptional activity of the human endogenous retrovirus family HERV-K(HML-2)
L Lavie et al.
JOURNAL OF VIROLOGY (2005)
Human endogenous retrovirus K solo-LTR formation and insertional polymorphisms: Implications for human and viral evolution
JF Hughes et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Tissue specificity of enhancer and promoter activities of a HERV-K(HML-2) LTR
VM Ruda et al.
VIRUS RESEARCH (2004)
Herv-K(HML-2) Gag/Env antibodies as indicator for therapy effect in patients with germ cell tumors
A Kleiman et al.
INTERNATIONAL JOURNAL OF CANCER (2004)
The UCSC Table Browser data retrieval tool
D Karolchik et al.
NUCLEIC ACIDS RESEARCH (2004)
Quantitation of HERV-K env gene expression and splicing in human breast cancer
F Wang-Johanning et al.
ONCOGENE (2003)
The human genome browser at UCSC
WJ Kent et al.
GENOME RESEARCH (2002)
Phenotypic heterogeneity of human endogenous retrovirus particles produced by teratocarcinoma cell lines
K Bieda et al.
JOURNAL OF GENERAL VIROLOGY (2001)
A Rev-like NES mediates cytoplasmic localization of HERV-K cORF
A Boese et al.
FEBS LETTERS (2000)
分享论文
