相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Single-molecule FRET analysis of DNA binding and bending by yeast HMGB protein Nhp6A
Julie E. Coats et al.
NUCLEIC ACIDS RESEARCH (2013)
Interplay of Protein and DNA Structure Revealed in Simulations of the lac Operon
Luke Czapla et al.
PLOS ONE (2013)
Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription
Kenneth W. Berendzen et al.
BMC PLANT BIOLOGY (2012)
DNA-protein interactions: methods for detection and analysis
Bipasha Dey et al.
MOLECULAR AND CELLULAR BIOCHEMISTRY (2012)
A transcription activator-like effector toolbox for genome engineering
Neville E. Sanjana et al.
NATURE PROTOCOLS (2012)
Genomic approaches towards finding cis-regulatory modules in animals
Ross C. Hardison et al.
NATURE REVIEWS GENETICS (2012)
Yeast one-hybrid assays: A historical and technical perspective
John S. Reece-Hoyes et al.
METHODS (2012)
Improved predictions of transcription factor binding sites using physicochemical features of DNA
Mark Maienschein-Cline et al.
NUCLEIC ACIDS RESEARCH (2012)
Screening for in planta protein-protein interactions combining bimolecular fluorescence complementation with flow cytometry
Kenneth Wayne Berendzen et al.
PLANT METHODS (2012)
Arabidopsis WRKY33 Is a Key Transcriptional Regulator of Hormonal and Metabolic Responses toward Botrytis cinerea Infection
Rainer P. Birkenbihl et al.
PLANT PHYSIOLOGY (2012)
Visualization and Curve-Parameter Estimation Strategies for Efficient Exploration of Phenotype Microarray Kinetics
Lea A. I. Vaas et al.
PLOS ONE (2012)
The Crystal Structure of TAL Effector PthXo1 Bound to Its DNA Target
Amanda Nga-Sze Mak et al.
SCIENCE (2012)
Social network: JAZ protein interactions expand our knowledge of jasmonate signaling
Amanda Wager et al.
FRONTIERS IN PLANT SCIENCE (2012)
DREME: motif discovery in transcription factor ChIP-seq data
Timothy L. Bailey
BIOINFORMATICS (2011)
DNA Recognition by Synthetic Constructs
Elena Pazos et al.
CHEMBIOCHEM (2011)
In Embryonic Stem Cells, ZFP57/KAP1 Recognize a Methylated Hexanucleotide to Affect Chromatin and DNA Methylation of Imprinting Control Regions
Simon Quenneville et al.
MOLECULAR CELL (2011)
Improved protein-binding microarrays for the identification of DNA-binding specificities of transcription factors
Marta Godoy et al.
PLANT JOURNAL (2011)
The Arabidopsis bZIP Gene AtbZIP63 Is a Sensitive Integrator of Transient Abscisic Acid and Glucose Signals
Cleverson Carlos Matiolli et al.
PLANT PHYSIOLOGY (2011)
Genome-wide transcription factor binding: beyond direct target regulation
Kyle L. MacQuarrie et al.
TRENDS IN GENETICS (2011)
Analysis of DNA-protein interactions: from nitrocellulose filter binding assays to microarray studies
Reham Helwa et al.
ANALYTICAL AND BIOANALYTICAL CHEMISTRY (2010)
Nhp6: A small but powerful effector of chromatin structure in Saccharomyces cerevisiae
David J. Stillman
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS (2010)
TAL effectors: finding plant genes for disease and defense
Adam J. Bogdanove et al.
CURRENT OPINION IN PLANT BIOLOGY (2010)
The role of phosphorylatable serine residues in the DNA-binding domain of Arabidopsis bZIP transcription factors
Tobias Kirchler et al.
EUROPEAN JOURNAL OF CELL BIOLOGY (2010)
Genome-Wide Phylogenetic Comparative Analysis of Plant Transcriptional Regulation: A Timeline of Loss, Gain, Expansion, and Correlation with Complexity
Daniel Lang et al.
GENOME BIOLOGY AND EVOLUTION (2010)
The Arabidopsis bZIP1 Transcription Factor Is Involved in Sugar Signaling, Protein Networking, and DNA Binding
Shin Gene Kang et al.
MOLECULAR PLANT (2010)
FlyTF: improved annotation and enhanced functionality of the Drosophila transcription factor database
Ulrike Pfreundt et al.
NUCLEIC ACIDS RESEARCH (2010)
DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro
Luise H. Brand et al.
PLANT METHODS (2010)
Future and frontiers of automated screening in plant sciences
Uener Kolukisaoglu et al.
PLANT SCIENCE (2010)
Predicting DNA-Binding Specificities of Eukaryotic Transcription Factors
Adrian Schroeder et al.
PLOS ONE (2010)
Regulation of selected genome loci using de novo-engineered transcription activator-like effector (TALE)-type transcription factors
Robert Morbitzer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2010)
WRKY transcription factors
Paul J. Rushton et al.
TRENDS IN PLANT SCIENCE (2010)
High Resolution Models of Transcription Factor-DNA Affinities Improve In Vitro and In Vivo Binding Predictions
Phaedra Agius et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
High-resolution DNA-binding specificity analysis of yeast transcription factors
Cong Zhu et al.
GENOME RESEARCH (2009)
The role of DNA shape in protein-DNA recognition
Remo Rohs et al.
NATURE (2009)
Universal protein-binding microarrays for the comprehensive characterization of the DNA-binding specificities of transcription factors
Michael F. Berger et al.
NATURE PROTOCOLS (2009)
Modulation of the DNA-binding activity of Saccharomyces cerevisiae MSH2-MSH6 complex by the high-mobility group protein NHP6A, in vitro
Mohamed Labazi et al.
NUCLEIC ACIDS RESEARCH (2009)
UniPROBE: an online database of protein binding microarray data on protein-DNA interactions
Daniel E. Newburger et al.
NUCLEIC ACIDS RESEARCH (2009)
A Critical Role for the TIFY Motif in Repression of Jasmonate Signaling by a Stabilized Splice Variant of the JASMONATE ZIM-Domain Protein JAZ10 in Arabidopsis
Hoo Sun Chung et al.
PLANT CELL (2009)
Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors
Jens Boch et al.
SCIENCE (2009)
Diversity and Complexity in DNA Recognition by Transcription Factors
Gwenael Badis et al.
SCIENCE (2009)
Protein-binding microarrays: probing disease markers at the interface of proteomics and genomics
Jan Kerschgens et al.
TRENDS IN MOLECULAR MEDICINE (2009)
ChIPping away at gene regulation
Charles E. Massie et al.
EMBO REPORTS (2008)
Predicting expression patterns from regulatory sequence in Drosophila segmentation
Eran Segal et al.
NATURE (2008)
Studies on DNA-binding selectivity of WRKY transcription factors lend structural clues into WRKY-domain function
Ingo Ciolkowski et al.
PLANT MOLECULAR BIOLOGY (2008)
JASPAR, the open access database of transcription factor-binding profiles: new content and tools in the 2008 update
Jan Christian Bryne et al.
NUCLEIC ACIDS RESEARCH (2008)
SELEX experiments: New prospects, applications and data analysis in inferring regulatory pathways
Marko Djordjevic
BIOMOLECULAR ENGINEERING (2007)
Inferring condition-specific transcription factor function from DNA binding and gene expression data
Rachel Patton McCord et al.
MOLECULAR SYSTEMS BIOLOGY (2007)
Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions
Lance M. Hellman et al.
NATURE PROTOCOLS (2007)
The tify family previously known as ZIM
Bartel Vanholme et al.
TRENDS IN PLANT SCIENCE (2007)
The natural history of the WRKY-GCM1 zinc fingers and the relationship between transcription factors and transposons
M. Madan Babu et al.
NUCLEIC ACIDS RESEARCH (2006)
High-throughput methods of regulatory element discovery
Michael E. Hudson et al.
BIOTECHNIQUES (2006)
Cis-motifs upstream of the transcription and translation initiation sites are effectively revealed by their positional disequilibrium in eukaryote genomes using frequency distribution curves
Kenneth W. Berendzen et al.
BMC BIOINFORMATICS (2006)
bZIP10-LSD1 antagonism modulates basal defense and cell death in Arabidopsis following infection
Hironori Kaminaka et al.
EMBO JOURNAL (2006)
Extensive low-affinity transcriptional interactions in the yeast genome
Amos Tanay
GENOME RESEARCH (2006)
Two-hybrid protein-protein interaction analysis in Arabidopsis protoplasts:: establishment of a heterodimerization map of group C and group S bZIP transcription factors
Andrea Ehlert et al.
PLANT JOURNAL (2006)
Inference by eye - Confidence intervals and how to read pictures of data
G Cumming et al.
AMERICAN PSYCHOLOGIST (2005)
Role for Nhp6, Gcn5, and the Swi/Snf complex in stimulating formation of the TATA-binding protein-TFIIA-DNA complex
D Biswas et al.
MOLECULAR AND CELLULAR BIOLOGY (2004)
WebLogo: A sequence logo generator
GE Crooks et al.
GENOME RESEARCH (2004)
Determinants of GATA-1 binding to DNA - The role of non-finger residues
R Ghirlando et al.
JOURNAL OF BIOLOGICAL CHEMISTRY (2003)
TRANSFAC (R): transcriptional regulation, from patterns to profiles
V Matys et al.
NUCLEIC ACIDS RESEARCH (2003)
New ELISA technique for analysis of p53 protein/DNA binding properties
E Jagelská et al.
JOURNAL OF IMMUNOLOGICAL METHODS (2002)
High-throughput SELEX-SAGE method for quantitative modeling of transcription-factor binding sites
E Roulet et al.
NATURE BIOTECHNOLOGY (2002)
Transcriptional regulation of erythropoiesis: an affair involving multiple partners
AB Cantor et al.
ONCOGENE (2002)
Synthetic plant promoters containing defined regulatory elements provide novel insights into pathogen- and wound-induced signaling
PJ Rushton et al.
PLANT CELL (2002)
MAP kinase signalling cascade in Arabidopsis innate immunity
T Asai et al.
NATURE (2002)
Transactivation properties of parsley proline-rich bZIP transcription factors
M Sprenger-Haussels et al.
PLANT JOURNAL (2000)
The WRKY superfamily of plant transcription factors
T Eulgem et al.
TRENDS IN PLANT SCIENCE (2000)
Molecular evolution of the GATA family of transcription factors: Conservation within the DNA-binding domain
JA Lowry et al.
JOURNAL OF MOLECULAR EVOLUTION (2000)
TRANSFAC: an integrated system for gene expression regulation
E Wingender et al.
NUCLEIC ACIDS RESEARCH (2000)
分享论文
