相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。Classification and Comparison of Small RNAs from Plants
Michael J. Axtell
ANNUAL REVIEW OF PLANT BIOLOGY, VOL 64 (2013)
Physiological stressors and invasive plant infections alter the small RNA transcriptome of the rice blast fungus, Magnaporthe oryzae
Vidhyavathi Raman et al.
BMC GENOMICS (2013)
MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability
Kazutaka Katoh et al.
MOLECULAR BIOLOGY AND EVOLUTION (2013)
RNA interference in the nucleus: roles for small RNAs in transcription, epigenetics and beyond
Stephane E. Castel et al.
NATURE REVIEWS GENETICS (2013)
Lessons on RNA Silencing Mechanisms in Plants from Eukaryotic Argonaute Structures
Christian Poulsen et al.
PLANT CELL (2013)
ShortStack: Comprehensive annotation and quantification of small RNA genes
Michael J. Axtell
RNA (2013)
Transgenerational gene silencing causes gain of virulence in a plant pathogen
Dinah Qutob et al.
NATURE COMMUNICATIONS (2013)
RNA Interference Pathways in Fungi: Mechanisms and Functions
Shwu-Shin Chang et al.
ANNUAL REVIEW OF MICROBIOLOGY, VOL 66 (2012)
The Structure of Human Argonaute-2 in Complex with miR-20a
Elad Elkayam et al.
CELL (2012)
Regulation of small RNA stability: methylation and beyond
Lijuan Ji et al.
CELL RESEARCH (2012)
The Genome Portal of the Department of Energy Joint Genome Institute
Igor V. Grigoriev et al.
NUCLEIC ACIDS RESEARCH (2012)
The Pfam protein families database
Marco Punta et al.
NUCLEIC ACIDS RESEARCH (2012)
Evidence for Small RNAs Homologous to Effector-Encoding Genes and Transposable Elements in the Oomycete Phytophthora infestans
Ramesh R. Vetukuri et al.
PLOS ONE (2012)
The Crystal Structure of Human Argonaute2
Nicole T. Schirle et al.
SCIENCE (2012)
Dendroscope 3: An Interactive Tool for Rooted Phylogenetic Trees and Networks
Daniel H. Huson et al.
SYSTEMATIC BIOLOGY (2012)
Diverse and tissue-enriched small RNAs in the plant pathogenic fungus, Magnaporthe oryzae
Cristiano C. Nunes et al.
BMC GENOMICS (2011)
Genome-wide identification of Phytophthora sojae SNARE genes and functional characterization of the conserved SNARE PsYKT6
Wei Zhao et al.
FUNGAL GENETICS AND BIOLOGY (2011)
MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods
Koichiro Tamura et al.
MOLECULAR BIOLOGY AND EVOLUTION (2011)
Evidence for involvement of Dicer-like, Argonaute and histone deacetylase proteins in gene silencing in Phytophthora infestans
Ramesh R. Vetukuri et al.
MOLECULAR PLANT PATHOLOGY (2011)
Small RNA sorting: matchmaking for Argonautes
Benjamin Czech et al.
NATURE REVIEWS GENETICS (2011)
ParameciumDB in 2011: new tools and new data for functional and comparative genomics of the model ciliate Paramecium tetraurelia
Olivier Arnaiz et al.
NUCLEIC ACIDS RESEARCH (2011)
Sequence Variants of the Phytophthora sojae RXLR Effector Avr3a/5 Are Differentially Recognized by Rps3a and Rps5 in Soybean
Suomeng Dong et al.
PLOS ONE (2011)
UniProt Knowledgebase: a hub of integrated protein data
Michele Magrane
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION (2011)
Profiles of Small Non-Coding RNAs in Schistosoma japonicum during Development
Pengfei Cai et al.
PLOS NEGLECTED TROPICAL DISEASES (2011)
Vive la difference: biogenesis and evolution of microRNAs in plants and animals
Michael J. Axtell et al.
GENOME BIOLOGY (2011)
Different Domains of Phytophthora sojae Effector Avr4/6 Are Recognized by Soybean Resistance Genes Rps4 and Rps6
Daolong Dou et al.
MOLECULAR PLANT-MICROBE INTERACTIONS (2010)
PLANT PATHOLOGY Sudden larch death
Clive Brasier et al.
NATURE (2010)
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
Julie A. Law et al.
NATURE REVIEWS GENETICS (2010)
A Molecular Genetic Timescale for the Diversification of Autotrophic Stramenopiles (Ochrophyta): Substantive Underestimation of Putative Fossil Ages
Joseph W. Brown et al.
PLOS ONE (2010)
Genome Evolution Following Host Jumps in the Irish Potato Famine Pathogen Lineage
Sylvain Raffaele et al.
SCIENCE (2010)
A Small-RNA Perspective on Gametogenesis, Fertilization, and Early Zygotic Development
Deborah Bourc'his et al.
SCIENCE (2010)
A Complex Small RNA Repertoire Is Generated by a Plant/Fungal-Like Machinery and Effected by a Metazoan-Like Argonaute in the Single-Cell Human Parasite Toxoplasma gondii
Laurence Braun et al.
PLOS PATHOGENS (2010)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
BLAST plus : architecture and applications
Christiam Camacho et al.
BMC BIOINFORMATICS (2009)
Origin, Biogenesis, and Activity of Plant MicroRNAs
Olivier Voinnet
CELL (2009)
Origins and Mechanisms of miRNAs and siRNAs
Richard W. Carthew et al.
CELL (2009)
A three-dimensional view of the molecular machinery of RNA interference
Martin Jinek et al.
NATURE (2009)
Genome sequence and analysis of the Irish potato famine pathogen Phytophthora infestans
Brian J. Haas et al.
NATURE (2009)
Many roads to maturity: microRNA biogenesis pathways and their regulation
Julia Winter et al.
NATURE CELL BIOLOGY (2009)
Small silencing RNAs: an expanding universe
Megha Ghildiyal et al.
NATURE REVIEWS GENETICS (2009)
Biogenesis of small RNAs in animals
V. Narry Kim et al.
NATURE REVIEWS MOLECULAR CELL BIOLOGY (2009)
Computational and analytical framework for small RNA profiling by high-throughput sequencing
Noah Fahlgren et al.
RNA (2009)
Population Genetic Analysis Infers Migration Pathways of Phytophthora ramorum in US Nurseries
Erica M. Goss et al.
PLOS PATHOGENS (2009)
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
Ben Langmead et al.
GENOME BIOLOGY (2009)
A novel Phytophthora infestans haustorium-specific membrane protein is required for infection of potato
Anna O. Avrova et al.
CELLULAR MICROBIOLOGY (2008)
A putative DEAD-box RNA-helicase is required for normal zoospore development in the late blight pathogen Phytophthora infestans
Claire A. Walker et al.
FUNGAL GENETICS AND BIOLOGY (2008)
A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences
Jaime E. Blair et al.
FUNGAL GENETICS AND BIOLOGY (2008)
Phytophthora ramorum: a pathogen with a remarkably wide host range causing sudden oak death on oaks and ramorum blight on woody ornamentals
Niklaus J. Gruenwald et al.
MOLECULAR PLANT PATHOLOGY (2008)
Phytophthora infestans:: the plant (and R gene) destroyer
William Fry
MOLECULAR PLANT PATHOLOGY (2008)
The Drosophila hairpin RNA pathway generates endogenous short interfering RNAs
Katsutomo Okamura et al.
NATURE (2008)
Structure of the guide-strand-containing argonaute silencing complex
Yanli Wang et al.
NATURE (2008)
Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes
Toshiaki Watanabe et al.
NATURE (2008)
Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes
Oliver H. Tam et al.
NATURE (2008)
An endogenous small interfering RNA pathway in Drosophila
Benjamin Czech et al.
NATURE (2008)
Internuclear gene silencing in Phytophthora infestans is established through chromatin remodelling
Pieter van West et al.
MICROBIOLOGY-SGM (2008)
High-throughput functional annotation and data mining with the Blast2GO suite
Stefan Gotz et al.
NUCLEIC ACIDS RESEARCH (2008)
Cellulose synthesis in Phytophthora infestans is required for normal appressorium formation and successful infection of potato
Laura J. Grenville-Briggs et al.
PLANT CELL (2008)
Endogenous siRNAs derived from transposons and mRNAs in Drosophila somatic cells
Megha Ghildiyal et al.
SCIENCE (2008)
Origins and evolution of eukaryotic RNA interference
Svetlana A. Shabalina et al.
TRENDS IN ECOLOGY & EVOLUTION (2008)
Evolution of plant microRNAs and their targets
Michael J. Axtell et al.
TRENDS IN PLANT SCIENCE (2008)
The Arabidopsis Information Resource (TAIR): gene structure and function annotation
David Swarbreck et al.
NUCLEIC ACIDS RESEARCH (2008)
Specialization and evolution of endogenous small RNA pathways
Elisabeth J. Chapman et al.
NATURE REVIEWS GENETICS (2007)
Transgene-induced silencing of the zoosporogenesis-specific NIFC gene cluster of Phytophthora infestans involves chromatin alterations
Howard S. Judelson et al.
EUKARYOTIC CELL (2007)
ParameciumDB:: a community resource that integrates the Paramecium tetraurelia genome sequence with genetic data
Olivier Arnaiz et al.
NUCLEIC ACIDS RESEARCH (2007)
Genome-wide profiling and analysis of Arabidopsis siRNAs
Kristin D. Kasschau et al.
PLOS BIOLOGY (2007)
Phytophthora sojae: root rot pathogen of soybean and model oomycete
Brett M. Tyler
MOLECULAR PLANT PATHOLOGY (2007)
Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C-elegans
J. Graham Ruby et al.
CELL (2006)
Whole-genome re-sequencing
David R. Bentley
CURRENT OPINION IN GENETICS & DEVELOPMENT (2006)
RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
Alexandros Stamatakis
BIOINFORMATICS (2006)
MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
Cheng Lu et al.
GENOME RESEARCH (2006)
Phytophthora genome sequences uncover evolutionary origins and mechanisms of pathogenesis
Brett M. Tyler et al.
SCIENCE (2006)
Structural basis for double-stranded RNA processing by dicer
IJ MacRae et al.
SCIENCE (2006)
Tetrahymena Genome Database (TGD): a new genomic resource for Tetrahymena thermophila research
Nicholas A. Stover et al.
NUCLEIC ACIDS RESEARCH (2006)
Structural basis for 5′-end-specific recognition of guide RNA by the A-fulgidus Piwi protein
JB Ma et al.
NATURE (2005)
Structural insights into mRNA recognition from a PIWI domain-siRNA guide complex
JS Parker et al.
NATURE (2005)
A method for double-stranded RNA-mediated transient gene silencing in Phytophthora infestans
SC Whisson et al.
MOLECULAR PLANT PATHOLOGY (2005)
MicroRNAs: Genomics, biogenesis, mechanism, and function
DP Bartel
CELL (2004)
Crystal structure of a PIWI protein suggests mechanisms for siRNA recognition and slicer activity
JS Parker et al.
EMBO JOURNAL (2004)
VISTA: computational tools for comparative genomics
KA Frazer et al.
NUCLEIC ACIDS RESEARCH (2004)
Cell cycle regulator Cdc14 is expressed during sporulation but not hyphal growth in the fungus-like oomycete Phytophthora infestans
AMVA Fong et al.
MOLECULAR MICROBIOLOGY (2003)
Vienna RNA secondary structure server
IL Hofacker
NUCLEIC ACIDS RESEARCH (2003)
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
C Llave et al.
SCIENCE (2002)
Ab initio gene finding in Drosophila genomic DNA
AA Salamov et al.
GENOME RESEARCH (2000)
分享论文
