相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Role of the Biomolecular Energy Gap in Protein Design, Structure, and Evolution
Sarel J. Fleishman et al.
CELL (2012)
Efficient sampling of protein conformational space using fast loop building and batch minimization on highly parallel computers
Michael D. Tyka et al.
JOURNAL OF COMPUTATIONAL CHEMISTRY (2012)
Computational Design of Catalytic Dyads and Oxyanion Holes for Ester Hydrolysis
Florian Richter et al.
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY (2012)
Principles for designing ideal protein structures
Nobuyasu Koga et al.
NATURE (2012)
Nonplanar peptide bonds in proteins are common and conserved but not biased toward active sites
Donald S. Berkholz et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Control of protein signaling using a computationally designed GTPase/GEF orthogonal pair
Gregory T. Kapp et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
Resolution-adapted recombination of structural features significantly improves sampling in restraint-guided structure calculation
Oliver F. Lange et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2012)
Four Small Puzzles That Rosetta Doesn't Solve
Rhiju Das
PLOS ONE (2011)
RosettaScripts: A Scripting Language Interface to the Rosetta Macromolecular Modeling Suite
Sarel J. Fleishman et al.
PLOS ONE (2011)
De Novo Enzyme Design Using Rosetta3
Florian Richter et al.
PLOS ONE (2011)
RosettaRemodel: A Generalized Framework for Flexible Backbone Protein Design
Po-Ssu Huang et al.
PLOS ONE (2011)
Generalized Fragment Picking in Rosetta: Design, Protocols and Applications
Dominik Gront et al.
PLOS ONE (2011)
Progress in super long loop prediction
Suwen Zhao et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2011)
Computation-Guided Backbone Grafting of a Discontinuous Motif onto a Protein Scaffold
Mihai L. Azoitei et al.
SCIENCE (2011)
MolProbity: all-atom structure validation for macromolecular crystallography
Vincent B. Chen et al.
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY (2010)
Protein loop modeling by using fragment assembly and analytical loop closure
Julian Lee et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2010)
NMR Structure Determination for Larger Proteins Using Backbone-Only Data
Srivatsan Raman et al.
SCIENCE (2010)
Neighbor-Dependent Ramachandran Probability Distributions of Amino Acids Developed from a Hierarchical Dirichlet Process Model
Daniel Ting et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
Backbone flexibility in computational protein design
Daniel J. Mandell et al.
CURRENT OPINION IN BIOTECHNOLOGY (2009)
Sampling Bottlenecks in De novo Protein Structure Prediction
David E. Kim et al.
JOURNAL OF MOLECULAR BIOLOGY (2009)
Sub-angstrom accuracy in protein loop reconstruction by robotics-inspired conformational sampling
Daniel J. Mandell et al.
NATURE METHODS (2009)
Alteration of enzyme specificity by computational loop remodeling and design
Paul M. Murphy et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
Macromolecular modeling with Rosetta
Rhiju Das et al.
ANNUAL REVIEW OF BIOCHEMISTRY (2008)
Computational techniques for efficient conformational sampling of proteins
Adam Liwo et al.
CURRENT OPINION IN STRUCTURAL BIOLOGY (2008)
Prediction of protein loop conformations using the AGBNP implicit solvent model and torsion angle sampling
Anthony K. Felts et al.
JOURNAL OF CHEMICAL THEORY AND COMPUTATION (2008)
Toward better refinement of comparative models: Predicting loops in inexact environments
Benjamin D. Sellers et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2008)
High-resolution structure prediction and the crystallographic phase problem
Bin Qian et al.
NATURE (2007)
High-resolution design of a protein loop
Xiaozhen Hu et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Protein-protein docking with backbone flexibility
Chu Wang et al.
JOURNAL OF MOLECULAR BIOLOGY (2007)
Toward high-resolution de novo structure prediction for small proteins
P Bradley et al.
SCIENCE (2005)
Full cyclic coordinate descent:: solving the protein loop closure problem in Cα space -: art. no. 159
W Boomsma et al.
BMC BIOINFORMATICS (2005)
Progress and challenges in high-resolution refinement of protein structure models
KMS Misura et al.
PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS (2005)
Protein-protein docking with simultaneous optimization of rigid-body displacement and side-chain conformations
JJ Gray et al.
JOURNAL OF MOLECULAR BIOLOGY (2003)
Cyclic coordinate descent: A robotics algorithm for protein loop closure
AA Canutescu et al.
PROTEIN SCIENCE (2003)
Monte Carlo backbone sampling for polypeptides with variable bond angles and dihedral angles using concerted rotations and a Gaussian bias
JP Ulmschneider et al.
JOURNAL OF CHEMICAL PHYSICS (2003)
Rotamer libraries in the 21st century
RL Dunbrack
CURRENT OPINION IN STRUCTURAL BIOLOGY (2002)