相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。INSIGHTS FROM GENOMICS INTO BACTERIAL PATHOGEN POPULATIONS
Daniel J. Wilson
OMICS IN CLINICAL PRACTICE: GENOMICS, PHARMACOGENOMICS, PROTEOMICS, AND TRANSCRIPTOMICS IN CLINICAL RESEARCH (2014)
Distortions in Genealogies Due to Purifying Selection
Lauren E. Nicolaisen et al.
MOLECULAR BIOLOGY AND EVOLUTION (2012)
De novo assembly and genotyping of variants using colored de Bruijn graphs
Zamin Iqbal et al.
NATURE GENETICS (2012)
Rapid Whole-Genome Sequencing for Investigation of a Neonatal MRSA Outbreak
Claudio U. Köser et al.
NEW ENGLAND JOURNAL OF MEDICINE (2012)
Insights from genomic comparisons of genetically monomorphic bacterial pathogens
Mark Achtman
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2012)
Evolutionary dynamics of Staphylococcus aureus during progression from carriage to disease
Bernadette C. Young et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2012)
A pilot study of rapid benchtop sequencing of Staphylococcus aureus and Clostridium difficile for outbreak detection and surveillance
David W. Eyre et al.
BMJ OPEN (2012)
Microevolutionary analysis of Clostridium difficile genomes to investigate transmission
Xavier Didelot et al.
GENOME BIOLOGY (2012)
Insights from Genomics into Bacterial Pathogen Populations
Daniel J. Wilson
PLOS PATHOGENS (2012)
Stampy: A statistical algorithm for sensitive and fast mapping of Illumina sequence reads
Gerton Lunter et al.
GENOME RESEARCH (2011)
Time-dependent rates of molecular evolution
Simon Y. W. Ho et al.
MOLECULAR ECOLOGY (2011)
Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes
Tami D. Lieberman et al.
NATURE GENETICS (2011)
Use of whole genome sequencing to estimate the mutation rate of Mycobacterium tuberculosis during latent infection
Christopher B. Ford et al.
NATURE GENETICS (2011)
Adaptive Evolution of Staphylococcus aureus during Chronic Endobronchial Infection of a Cystic Fibrosis Patient
Paul R. McAdam et al.
PLOS ONE (2011)
Helicobacter pylori genome evolution during human infection
Lynn Kennemann et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones
Santiago Castillo-Ramirez et al.
PLOS PATHOGENS (2011)
Are Host Genetics the Predominant Determinant of Persistent Nasal Staphylococcus aureus Carriage in Humans?
Raymond Ruimy et al.
JOURNAL OF INFECTIOUS DISEASES (2010)
progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement
Aaron E. Darling et al.
PLOS ONE (2010)
Evolution of MRSA During Hospital Transmission and Intercontinental Spread
Simon R. Harris et al.
SCIENCE (2010)
Microevolution of Helicobacter pylori during Prolonged Infection of Single Hosts and within Families
Giovanna Morelli et al.
PLOS GENETICS (2010)
A Genomic Survey of Positive Selection in Burkholderia pseudomallei Provides Insights into the Evolution of Accidental Virulence
Tannistha Nandi et al.
PLOS PATHOGENS (2010)
Host Imprints on Bacterial Genomes-Rapid, Divergent Evolution in Individual Patients
Jaroslaw Zdziarski et al.
PLOS PATHOGENS (2010)
Reordering contigs of draft genomes using the Mauve Aligner
Anna I. Rissman et al.
BIOINFORMATICS (2009)
The Sequence Alignment/Map format and SAMtools
Heng Li et al.
BIOINFORMATICS (2009)
Evolutionary analysis of the dynamics of viral infectious disease
Oliver G. Pybus et al.
NATURE REVIEWS GENETICS (2009)
Waves of resistance: Staphylococcus aureus in the antibiotic era
Henry F. Chambers et al.
NATURE REVIEWS MICROBIOLOGY (2009)
Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens
Mark Achtman
ANNUAL REVIEW OF MICROBIOLOGY (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Key role for clumping factor B in Staphylococcus aureus nasal colonization of humans
Heiman F. L. Wertheim et al.
PLOS MEDICINE (2008)
xBASE2: a comprehensive resource for comparative bacterial genomics
Roy R. Chaudhuri et al.
NUCLEIC ACIDS RESEARCH (2008)
Hospital exposure in a UK population, and its association with bacteraemia
D. H. Wyllie et al.
JOURNAL OF HOSPITAL INFECTION (2007)
High phenotypic diversity in infecting but not in colonizing Staphylococcus aureus populations
Christiane Goerke et al.
ENVIRONMENTAL MICROBIOLOGY (2007)
Tracking the in vivo evolution of multidrug resistance in Staphylococcus aureus by whole-genome sequencing
Michael M. Mwangi et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Inference of bacterial microevolution using multilocus sequence data
Xavier Didelot et al.
GENETICS (2007)
Epidemiology, clinical and laboratory characteristics of Staphylococcus aureus bacteraemia in a university hospital in UK
I. Das et al.
JOURNAL OF HOSPITAL INFECTION (2007)
Prophages of Staphylococcus aureus Newman and their contribution to virulence
Taeok Bae et al.
MOLECULAR MICROBIOLOGY (2006)
Extensive phage dynamics in Staphylococcus aureus contributes to adaptation to the human host during infection
Christiane Goerke et al.
MOLECULAR MICROBIOLOGY (2006)
Genetic adaptation by Pseudomonas aeruginosa to the airways of cystic fibrosis patients
Eric E. Smith et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Comparisons of dN/dS are time dependent for closely related bacterial genomes
EPC Rocha et al.
JOURNAL OF THEORETICAL BIOLOGY (2006)
Estimating diversifying selection and functional constraint in the presence of recombination
DJ Wilson et al.
GENETICS (2006)
The role of nasal carriage in Staphylococcus aureus infections
HFL Wertheim et al.
LANCET INFECTIOUS DISEASES (2005)
Phage variation: understanding the behaviour of an accidental pathogen
ER Moxon et al.
TRENDS IN MICROBIOLOGY (2005)
Methicillin-resistant Staphylococcus aureus carriage among patients after hospital discharge
MR Vriens et al.
INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY (2005)
Circular genome visualization and exploration using CGView
P Stothard et al.
BIOINFORMATICS (2005)
The clonality of Staphylococcus aureus nasal carriage
C Cespedes et al.
JOURNAL OF INFECTIOUS DISEASES (2005)
Metapopulation models for historical inference
J Wakeley
MOLECULAR ECOLOGY (2004)
Methicillin-resistant Staphylococcus aureus bacteraemia diagnosed at hospital admission:: distinguishing between community-acquired versus healthcare-associated strains
E Tacconelli et al.
JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY (2004)
Chemotaxis inhibitory protein of Staphylococcus aureus, a bacterial antiinflammatory agent
CJC de Haas et al.
JOURNAL OF EXPERIMENTAL MEDICINE (2004)
Increased frequency of genomic alterations in Staphylococcus aureus during chronic infection is in part due to phage mobilization
C Goerke et al.
JOURNAL OF INFECTIOUS DISEASES (2004)
Natural population dynamics and expansion of pathogenic clones of Staphylococcus aureus
DC Melles et al.
JOURNAL OF CLINICAL INVESTIGATION (2004)
Methicillin-resistant Staphylococcus aureus bacteraemia in Western Australian teaching hospitals, 1997-1999: risk factors, outcomes and implications for management
SP Cordova et al.
JOURNAL OF HOSPITAL INFECTION (2004)
Complete genomes of two clinical Staphylococcus aureus strains:: Evidence for the rapid evolution of virulence and drug resistance
MTG Holden et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2004)
Typing of methicillin-resistant Staphylococcus aureus in a university hospital setting by using novel software for spa repeat determination and database management
D Harmsen et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2003)
The frequency spectrum of a mutation, and its age, in a general diffusion model
RC Griffiths
THEORETICAL POPULATION BIOLOGY (2003)
How clonal is Staphylococcus aureus?
EJ Feil et al.
JOURNAL OF BACTERIOLOGY (2003)
Virulent combinations of adhesin and toxin genes in natural populations of Staphylococcus aureus
SJ Peacock et al.
INFECTION AND IMMUNITY (2002)
Association between Staphylococcus aureus strains carrying gene for Panton-Valentine leukocidin and highly lethal necrotising pneumonia in young immunocompetent patients
Y Gillet et al.
LANCET (2002)
The correlation between linkage disequilibrium and distance: Implications for recombination in hominid mitochondria
J Meunier et al.
MOLECULAR BIOLOGY AND EVOLUTION (2001)
Nasal carriage as a source of Staphylococcus aureus bacteremia.
C von Eiff et al.
NEW ENGLAND JOURNAL OF MEDICINE (2001)
分享论文
