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Xiao-Fei Zhang et al.
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Kahn Rhrissorrakrai et al.
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The BioGRID Interaction Database: 2011 update
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Peng Jiang et al.
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Xiaoli Li et al.
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Jianxin Wang et al.
BMC GENOMICS (2010)
Link communities reveal multiscale complexity in networks
Yong-Yeol Ahn et al.
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Finding overlapping communities in networks by label propagation
Steve Gregory
NEW JOURNAL OF PHYSICS (2010)
Associating Genes and Protein Complexes with Disease via Network Propagation
Oron Vanunu et al.
PLOS COMPUTATIONAL BIOLOGY (2010)
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Jimin Song et al.
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Complex discovery from weighted PPI networks
Guimei Liu et al.
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Ensemble non-negative matrix factorization methods for clustering proteinprotein interactions
Derek Greene et al.
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Protein complex identification by supervised graph local clustering
Yanjun Qi et al.
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Agglomerative fuzzy K-Means clustering algorithm with selection of number of clusters
Mark Junjie Li et al.
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Kirill Tarassov et al.
SCIENCE (2008)
Gene Ontology annotations at SGD: new data sources and annotation methods
Eurie L. Hong et al.
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Semantic integration to identify overlapping functional modules in protein interaction networks
Young-Rae Cho et al.
BMC BIOINFORMATICS (2007)
An ensemble framework for clustering protein-protein interaction networks
Sitaram Asur et al.
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Sparse non-negative matrix factorizations via alternating non-negativity-constrained least squares for microarray data analysis
Hyunsoo Kim et al.
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Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae
Sean R. Collins et al.
MOLECULAR & CELLULAR PROTEOMICS (2007)
Integration of biological networks and gene expression data using Cytoscape
Melissa S. Cline et al.
NATURE PROTOCOLS (2007)
Evaluation of clustering algorithms for protein-protein interaction networks
Sylvain Brohee et al.
BMC BIOINFORMATICS (2006)
CFinder:: locating cliques and overlapping modules in biological networks
B Adamcsek et al.
BIOINFORMATICS (2006)
Development and implementation of an algorithm for detection of protein complexes in large interaction networks
Md Altaf-Ul-Amin et al.
BMC BIOINFORMATICS (2006)
Proteome survey reveals modularity of the yeast cell machinery
AC Gavin et al.
NATURE (2006)
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae
NJ Krogan et al.
NATURE (2006)
BioGRID: a general repository for interaction datasets
Chris Stark et al.
NUCLEIC ACIDS RESEARCH (2006)
Clustering ensembles: Models of consensus and weak partitions
A Topchy et al.
IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE (2005)
Network biology:: Understanding the cell's functional organization
AL Barabási et al.
NATURE REVIEWS GENETICS (2004)
Protein complex prediction via cost-based clustering
AD King et al.
BIOINFORMATICS (2004)
MIPS: analysis and annotation of proteins from whole genomes
HW Mewes et al.
NUCLEIC ACIDS RESEARCH (2004)
An automated method for finding molecular complexes in large protein interaction networks
GD Bader et al.
BMC BIOINFORMATICS (2003)
Analyzing yeast protein-protein interaction data obtained from different sources
GD Bader et al.
NATURE BIOTECHNOLOGY (2002)
Hierarchical organization of modularity in metabolic networks
E Ravasz et al.
SCIENCE (2002)
Community structure in social and biological networks
M Girvan et al.
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An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
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A combined experimental and computational strategy to define protein interaction networks for peptide recognition modules
AHY Tong et al.
SCIENCE (2002)
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry
Y Ho et al.
NATURE (2002)
A comprehensive two-hybrid analysis to explore the yeast protein interactome
T Ito et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2001)
A network of protein-protein interactions in yeast
B Schwikowski et al.
NATURE BIOTECHNOLOGY (2000)