相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Comparison of cumulative drip sampling with whole carcass rinses for estimation of Campylobacter species and quality indicator organisms associated with processed broiler chickens
J. E. Line et al.
POULTRY SCIENCE (2013)
Abrupt Temporal Fluctuations in the Chicken Fecal Microbiota Are Explained by Its Gastrointestinal Origin
M. Sekelja et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2012)
Pyrosequencing-based validation of a simple cell-suspension polymerase chain reaction assay for Campylobacter with application of high-processivity polymerase and novel internal amplification controls for rapid and specific detection
Brian B. Oakley et al.
DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE (2012)
Application of high-throughput sequencing to measure the performance of commonly used selective cultivation methods for the foodborne pathogen Campylobacter
Brian B. Oakley et al.
FEMS MICROBIOLOGY ECOLOGY (2012)
Saliva microbiomes distinguish caries-active from healthy human populations
Fang Yang et al.
ISME JOURNAL (2012)
Using network analysis to explore co-occurrence patterns in soil microbial communities
Albert Barberan et al.
ISME JOURNAL (2012)
Selection of primers for optimal taxonomic classification of environmental 16S rRNA gene sequences
David A. W. Soergel et al.
ISME JOURNAL (2012)
The gut anaerobe Faecalibacterium prausnitzii uses an extracellular electron shuttle to grow at oxic-anoxic interphases
M. Tanweer Khan et al.
ISME JOURNAL (2012)
Economic Burden from Health Losses Due to Foodborne Illness in the United States
Robert L. Scharff
JOURNAL OF FOOD PROTECTION (2012)
Microbial interactions: from networks to models
Karoline Faust et al.
NATURE REVIEWS MICROBIOLOGY (2012)
Poultry as a Host for the Zoonotic Pathogen Campylobacter jejuni
David Hermans et al.
VECTOR-BORNE AND ZOONOTIC DISEASES (2012)
FLASH: fast length adjustment of short reads to improve genome assemblies
Tanja Magoc et al.
BIOINFORMATICS (2011)
Microbiology of Animal Bite Wound Infections
Fredrick M. Abrahamian et al.
CLINICAL MICROBIOLOGY REVIEWS (2011)
ThermoPhyl: a software tool for selecting phylogenetically optimized conventional and quantitative-PCR taxon-targeted assays for use with complex samples
Brian B. Oakley et al.
FEMS MICROBIOLOGY ECOLOGY (2011)
Use of Pyrosequencing and Denaturing Gradient Gel Electrophoresis to Examine the Effects of Probiotics and Essential Oil Blends on Digestive Microflora in Broilers Under Mixed Eimeria Infection
Michael E. Hume et al.
FOODBORNE PATHOGENS AND DISEASE (2011)
From farm to fork follow-up of thermotolerant campylobacters throughout the broiler production chain and in human cases in a Hungarian county during a ten-months period
I. Damjanova et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2011)
Oral Microbiome Profiles: 16S rRNA Pyrosequencing and Microarray Assay Comparison
Jiyoung Ahn et al.
PLOS ONE (2011)
Modulations of the Chicken Cecal Microbiome and Metagenome in Response to Anticoccidial and Growth Promoter Treatment
Jessica L. Danzeisen et al.
PLOS ONE (2011)
Carry-over of thermophilic Campylobacter spp. between sequential and adjacent poultry flocks
Thomas Alter et al.
VETERINARY MICROBIOLOGY (2011)
Foodborne Illness Acquired in the United States-Major Pathogens
Elaine Scallan et al.
EMERGING INFECTIOUS DISEASES (2011)
Foodborne Illness Acquired in the United States-Unspecified Agents
Elaine Scallan et al.
EMERGING INFECTIOUS DISEASES (2011)
Antibiotic Manipulation of Intestinal Microbiota To Identify Microbes Associated with Campylobacter jejuni Exclusion in Poultry
A. J. Scupham et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2010)
PyNAST: a flexible tool for aligning sequences to a template alignment
J. Gregory Caporaso et al.
BIOINFORMATICS (2010)
Manipulation of FASTQ data with Galaxy
Daniel Blankenberg et al.
BIOINFORMATICS (2010)
Search and clustering orders of magnitude faster than BLAST
Robert C. Edgar
BIOINFORMATICS (2010)
Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates
Victor Kunin et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
Ironing out the wrinkles in the rare biosphere through improved OTU clustering
Susan M. Huse et al.
ENVIRONMENTAL MICROBIOLOGY (2010)
QIIME allows analysis of high-throughput community sequencing data
J. Gregory Caporaso et al.
NATURE METHODS (2010)
Quantification of Faecalibacterium prausnitzii- and Subdoligranulum variabile-like bacteria in the cecum of chickens by real-time PCR
M. Lund et al.
POULTRY SCIENCE (2010)
Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities
Patrick D. Schloss et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Gene Context Analysis in the Integrated Microbial Genomes (IMG) Data Management System
Konstantinos Mavromatis et al.
PLOS ONE (2009)
Broiler Campylobacter Contamination and Human Campylobacteriosis in Iceland
Kenneth A. Callicott et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Molecular epidemiology of Campylobacter jejuni populations in dairy cattle, wildlife, and the environment in a farmland area
Patrick S. L. Kwan et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Occurrence and genotypes of Campylobacter in broiler flocks, other farm animals, and the environment during several rearing periods on selected poultry farms
Claudio Zweifel et al.
INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY (2008)
Comparison of poultry exudate and carcass rinse sampling methods for the recovery of Campylobacter spp. subtypes demonstrates unique subtypes recovered from exudate
M. Simmons et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2008)
Global trends in emerging infectious diseases
Kate E. Jones et al.
NATURE (2008)
Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex
Micah Hamady et al.
NATURE METHODS (2008)
Comparative Metagenomics Reveals Host Specific Metavirulomes and Horizontal Gene Transfer Elements in the Chicken Cecum Microbiome
Ani Qu et al.
PLOS ONE (2008)
The influence of sex, handedness, and washing on the diversity of hand surface bacteria
Noah Fierer et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
SILVA:: a comprehensive online resource for quality checked and aligned ribosomal RNA sequence data compatible with ARB
Elmar Pruesse et al.
NUCLEIC ACIDS RESEARCH (2007)
The growing threat of foodborne bacterial enteropathogens of animal origin
Herbert L. DuPont
CLINICAL INFECTIOUS DISEASES (2007)
Accuracy and quality of massively parallel DNA pyrosequencing
Susan M. Huse et al.
GENOME BIOLOGY (2007)
Campylobacter jejuni: molecular biology and pathogenesis
Kathryn T. Young et al.
NATURE REVIEWS MICROBIOLOGY (2007)
Microbial diversity in the deep sea and the underexplored rare biosphere
Mitchell L. Sogin et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2006)
Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences
Weizhong Li et al.
BIOINFORMATICS (2006)
Campylobacter in poultry:: Filling an ecological niche
MD Lee et al.
AVIAN DISEASES (2006)
In vivo studies of Gallibacterium anatis infection in chickens
AM Bojesen et al.
AVIAN PATHOLOGY (2004)
ARB:: a software environment for sequence data
W Ludwig et al.
NUCLEIC ACIDS RESEARCH (2004)
Flies and Campylobacter infection of broiler flocks
B Hald et al.
EMERGING INFECTIOUS DISEASES (2004)
Development of an extensive set of 16S rDNA-targeted primers for quantification of pathogenic and indigenous bacteria in faecal samples by real-time PCR
T Rinttila et al.
JOURNAL OF APPLIED MICROBIOLOGY (2004)
The role of litter beetles as potential reservoir for Salmonella enterica and thermophilic Campylobacter spp. between broiler flocks
MN Skov et al.
AVIAN DISEASES (2004)
Comparison of sampling methods for the detection of Salmonella on whole broiler carcasses purchased from retail outlets
M Simmons et al.
JOURNAL OF FOOD PROTECTION (2003)
Sources of Campylobacter colonization in broiler chickens
DG Newell et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Evaluation of broiler litter with reference to the microbial composition as assessed by using 16S rRNA and functional gene markers
JR Li et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
Diversity and succession of the intestinal bacterial community of the maturing broiler chicken
JR Lu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2003)
The uncultured microbial majority
MS Rappe et al.
ANNUAL REVIEW OF MICROBIOLOGY (2003)
Molecular subtype analyses of Campylobacter spp. from Arkansas and California poultry operations
KL Hiett et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Population biology of emerging and re-emerging pathogens
MEJ Woolhouse
TRENDS IN MICROBIOLOGY (2002)
16S rRNA-based analysis of microbiota from the cecum of broiler chickens
XY Zhu et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2002)
Distribution of Campylobacter spp. in selected US poultry production and processing operations
NJ Stern et al.
JOURNAL OF FOOD PROTECTION (2001)
Risk factors for human disease emergence
LH Taylor et al.
PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2001)
Difficulty in recovering inoculated Campylobacter jejuni from dry poultry-associated samples
NA Cox et al.
JOURNAL OF FOOD PROTECTION (2001)
Rapid method for coextraction of DNA and RNA from natural environments for analysis of ribosomal DNA- and rRNA-based microbial community composition
RI Griffiths et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)
Sequential spread of Campylobacter infection in a multipen broiler house
JE Shreeve et al.
AVIAN DISEASES (2000)
Presence and level of Campylobacter spp. on broiler carcasses throughout the processing plant
ME Berrang et al.
JOURNAL OF APPLIED POULTRY RESEARCH (2000)