相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Probiotic properties of Weissella strains isolated from human faeces
Kang Wool Lee et al.
ANAEROBE (2012)
Contribution of Siderophore Systems to Growth and Urinary Tract Colonization of Asymptomatic Bacteriuria Escherichia coli
Rebecca E. Watts et al.
INFECTION AND IMMUNITY (2012)
Standard Colonic Lavage Alters the Natural State of Mucosal-Associated Microbiota in the Human Colon
Laura Harrell et al.
PLOS ONE (2012)
Evaluation of Methods for the Extraction and Purification of DNA from the Human Microbiome
Sanqing Yuan et al.
PLOS ONE (2012)
Amplification by PCR Artificially Reduces the Proportion of the Rare Biosphere in Microbial Communities
Juan M. Gonzalez et al.
PLOS ONE (2012)
High-Throughput Sequencing of 16S rRNA Gene Amplicons: Effects of Extraction Procedure, Primer Length and Annealing Temperature
Martin J. Sergeant et al.
PLOS ONE (2012)
Non-Invasive Mapping of the Gastrointestinal Microbiota Identifies Children with Inflammatory Bowel Disease
Eliseo Papa et al.
PLOS ONE (2012)
Implications of Pyrosequencing Error Correction for Biological Data Interpretation
Matthew G. Bakker et al.
PLOS ONE (2012)
PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets
Ameet J. Pinto et al.
PLOS ONE (2012)
Groundtruthing Next-Gen Sequencing for Microbial Ecology-Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing
Charles K. Lee et al.
PLOS ONE (2012)
Interaction between the intestinal microbiota and host in Clostridium difficile colonization resistance
Robert A. Britton et al.
TRENDS IN MICROBIOLOGY (2012)
Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples
Nicola Segata et al.
GENOME BIOLOGY (2012)
UCHIME improves sensitivity and speed of chimera detection
Robert C. Edgar et al.
BIOINFORMATICS (2011)
Removing Noise From Pyrosequenced Amplicons
Christopher Quince et al.
BMC BIOINFORMATICS (2011)
Spatial organization of intestinal microbiota in the mouse ascending colon
Gerardo M. Nava et al.
ISME JOURNAL (2011)
Reproducibility and quantitation of amplicon sequencing-based detection
Jizhong Zhou et al.
ISME JOURNAL (2011)
Pseudomonas putida bacteremia in adult patients: five case reports and a review of the literature
Yusuke Yoshino et al.
JOURNAL OF INFECTION AND CHEMOTHERAPY (2011)
Enterotypes of the human gut microbiome
Manimozhiyan Arumugam et al.
NATURE (2011)
Assessing Gut Microbial Diversity from Feces and Rectal Mucosa
Ana Durban et al.
MICROBIAL ECOLOGY (2011)
The Effects from DNA Extraction Methods on the Evaluation of Microbial Diversity Associated with Human Colonic Tissue
Paraic O. Cuiv et al.
MICROBIAL ECOLOGY (2011)
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
Patrick D. Schloss et al.
PLOS ONE (2011)
The two mucus layers of colon are organized by the MUC2 mucin, whereas the outer layer is a legislator of host-microbial interactions
Malin E. V. Johansson et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
Les Dethlefsen et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2011)
Comparative genomics and functional analysis of niche-specific adaptation in Pseudomonas putida
Xiao Wu et al.
FEMS MICROBIOLOGY REVIEWS (2011)
edgeR: a Bioconductor package for differential expression analysis of digital gene expression data
Mark D. Robinson et al.
BIOINFORMATICS (2010)
Enterobacteriaceae Act in Concert with the Gut Microbiota to Induce Spontaneous and Maternally Transmitted Colitis
Wendy S. Garrett et al.
CELL HOST & MICROBE (2010)
A Molecular Analysis of Fecal and Mucosal Bacterial Communities in Irritable Bowel Syndrome
Caroline Codling et al.
DIGESTIVE DISEASES AND SCIENCES (2010)
Intestinal dysbiosis in irritable bowel syndrome: etiological factor or epiphenomenon?
Cesare Cremon et al.
EXPERT REVIEW OF MOLECULAR DIAGNOSTICS (2010)
Characterization of dextran-producing Weissella strains isolated from sourdoughs and evidence of constitutive dextransucrase expression
Marie-Sophie Bounaix et al.
FEMS MICROBIOLOGY LETTERS (2010)
A Pyrosequencing Study in Twins Shows That Gastrointestinal Microbial Profiles Vary With Inflammatory Bowel Disease Phenotypes
Ben P. Willing et al.
GASTROENTEROLOGY (2010)
Comparative analysis of fecal DNA extraction methods with phylogenetic microarray: Effective recovery of bacterial and archaeal DNA using mechanical cell lysis
Anne Salonen et al.
JOURNAL OF MICROBIOLOGICAL METHODS (2010)
Infernal 1.0: inference of RNA alignments
Eric P. Nawrocki et al.
BIOINFORMATICS (2009)
Commensal bacteria, traditional and opportunistic pathogens, dysbiosis and bacterial killing in inflammatory bowel diseases
Christopher D. Packey et al.
CURRENT OPINION IN INFECTIOUS DISEASES (2009)
Postinfectious Irritable Bowel Syndrome
Robin Spiller et al.
GASTROENTEROLOGY (2009)
Low Counts of Faecalibacterium prausnitzii in Colitis Microbiota
H. Sokol et al.
INFLAMMATORY BOWEL DISEASES (2009)
The core gut microbiome, energy balance and obesity
Peter J. Turnbaugh et al.
JOURNAL OF PHYSIOLOGY-LONDON (2009)
Accurate determination of microbial diversity from 454 pyrosequencing data
Christopher Quince et al.
NATURE METHODS (2009)
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis
J. R. Cole et al.
NUCLEIC ACIDS RESEARCH (2009)
Bacterial Community Variation in Human Body Habitats Across Space and Time
Elizabeth K. Costello et al.
SCIENCE (2009)
Statistical Methods for Detecting Differentially Abundant Features in Clinical Metagenomic Samples
James Robert White et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Metagenomic approaches for defining the pathogenesis of inflammatory bowel diseases
Daniel A. Peterson et al.
CELL HOST & MICROBE (2008)
The species composition of the human intestinal microbiota differs between particle-associated and liquid phase communities
Alan W. Walker et al.
ENVIRONMENTAL MICROBIOLOGY (2008)
Microbial biofilm communities in the gastrointestinal tract
Sandra Macfarlane
JOURNAL OF CLINICAL GASTROENTEROLOGY (2008)
Decreased diversity of the fecal microbiome in recurrent Clostridium difficile-associated diarrhea
Ju Young Chang et al.
JOURNAL OF INFECTIOUS DISEASES (2008)
The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis
Philip McKenna et al.
PLOS PATHOGENS (2008)
Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients
Harry Sokol et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2008)
An ecological and evolutionary perspective on human-microbe mutualism and disease
Les Dethlefsen et al.
NATURE (2007)
The Human Microbiome Project
Peter J. Turnbaugh et al.
NATURE (2007)
Short pyrosequencing reads suffice for accurate microbial community analysis
Zongzhi Liu et al.
NUCLEIC ACIDS RESEARCH (2007)
Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases
Daniel N. Frank et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
Qiong Wang et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2007)
Microbial biofilms in the human gastrointestinal tract
S. Macfarlane et al.
JOURNAL OF APPLIED MICROBIOLOGY (2007)
Accuracy and quality of massively parallel DNA pyrosequencing
Susan M. Huse et al.
GENOME BIOLOGY (2007)
Host-mediated inflammation disrupts the intestinal microbiota and promotes the overgrowth of Enterobacteriaceae (Vol 2, pg 119, 2007)
Claudia Lupp et al.
CELL HOST & MICROBE (2007)
Effect of bowel preparation and colonoscopy on post-procedure intestinal microbiota composition
V. Mai et al.
GUT (2006)
Spatial organization and composition of the mucosal flora in patients with inflammatory bowel disease
A Swidsinski et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2005)
Prospective, randomized, parallel-group trial to evaluate the effects of lactulose and polyethylene glycol-4000 on colonic flora in chronic idiopathic constipation
Y Bouhnik et al.
ALIMENTARY PHARMACOLOGY & THERAPEUTICS (2004)
Antibiotic-associated diarrhea accompanied by large-scale alterations in the composition of the fecal microbiota
VB Young et al.
JOURNAL OF CLINICAL MICROBIOLOGY (2004)
Getting a grip on things: how do communities of bacterial symbionts become established in our intestine?
JL Sonnenburg et al.
NATURE IMMUNOLOGY (2004)
Maintaining remission of ulcerative colitis with the probiotic Escherichia coli Nissle 1917 is as effective as with standard mesalazine
W Kruis et al.
GUT (2004)
Therapeutic manipulation of the enteric microflora in inflammatory bowel diseases: Antibiotics, probiotics, and prebiotics
RB Sartor
GASTROENTEROLOGY (2004)
Reduction in diversity of the colonic mucosa associated bacterial microflora in patients with active inflammatory bowel disease
SJ Ott et al.
GUT (2004)
Cytoscape: A software environment for integrated models of biomolecular interaction networks
P Shannon et al.
GENOME RESEARCH (2003)
Complete genome sequence and comparative analysis of the metabolically versatile Pseudomonas putida KT2440
KE Nelson et al.
ENVIRONMENTAL MICROBIOLOGY (2002)
Biodiversity as a barrier to ecological invasion
TA Kennedy et al.
NATURE (2002)