4.6 Article

Contextualization Procedure and Modeling of Monocyte Specific TLR Signaling

相关参考文献

注意:仅列出部分参考文献,下载原文获取全部文献信息。
Article Biochemistry & Molecular Biology

A Whole-Cell Computational Model Predicts Phenotype from Genotype

Jonathan R. Karr et al.

Article Biochemical Research Methods

A Linearized Constraint-Based Approach for Modeling Signaling Networks

Liram Vardi et al.

JOURNAL OF COMPUTATIONAL BIOLOGY (2012)

Article Multidisciplinary Sciences

Controlling the Outcome of the Toll-Like Receptor Signaling Pathways

Guilhem Richard et al.

PLOS ONE (2012)

Article Biochemical Research Methods

Functional integration of a metabolic network model and expression data without arbitrary thresholding

Paul A. Jensen et al.

BIOINFORMATICS (2011)

Article Biochemical Research Methods

rBioNet: A COBRA toolbox extension for reconstructing high-quality biochemical networks

Stefan Gretar Thorleifsson et al.

BIOINFORMATICS (2011)

Article Pharmacology & Pharmacy

TLR based therapeutics

Aisling Dunne et al.

CURRENT OPINION IN PHARMACOLOGY (2011)

Article Biochemical Research Methods

Quantitative prediction of cellular metabolism with constraint-based models: the COBRA Toolbox v2.0

Jan Schellenberger et al.

NATURE PROTOCOLS (2011)

Article Biochemistry & Molecular Biology

Entrez Gene: gene-centered information at NCBI

Donna Maglott et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemistry & Molecular Biology

Ongoing and future developments at the Universal Protein Resource

Rolf Apweiler et al.

NUCLEIC ACIDS RESEARCH (2011)

Article Biochemical Research Methods

Computationally efficient flux variability analysis

Steinn Gudmundsson et al.

BMC BIOINFORMATICS (2010)

Review Biochemistry & Molecular Biology

TLRs and chronic inflammation

Caroline Ospelt et al.

INTERNATIONAL JOURNAL OF BIOCHEMISTRY & CELL BIOLOGY (2010)

Article Biotechnology & Applied Microbiology

What is flux balance analysis?

Jeffrey D. Orth et al.

NATURE BIOTECHNOLOGY (2010)

Article Biochemical Research Methods

A protocol for generating a high-quality genome-scale metabolic reconstruction

Ines Thiele et al.

NATURE PROTOCOLS (2010)

Article Biochemistry & Molecular Biology

AltAnalyze and DomainGraph: analyzing and visualizing exon expression data

Dorothea Emig et al.

NUCLEIC ACIDS RESEARCH (2010)

Review Immunology

Blood Monocytes: Development, Heterogeneity, and Relationship with Dendritic Cells

Cedric Auffray et al.

ANNUAL REVIEW OF IMMUNOLOGY (2009)

Article Biochemical Research Methods

Identification of Potential Pathway Mediation Targets in Toll-like Receptor Signaling

Fan Li et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Article Biochemical Research Methods

Functional States of the Genome-Scale Escherichia Coli Transcriptional Regulatory System

Erwin P. Gianchandani et al.

PLOS COMPUTATIONAL BIOLOGY (2009)

Review Oncology

Toll-like receptors and cancer

Seth Rakoff-Nahoum et al.

NATURE REVIEWS CANCER (2009)

Review Immunology

Monocyte-mediated defense against microbial pathogens

Natalya V. Serbina et al.

ANNUAL REVIEW OF IMMUNOLOGY (2008)

Article Biochemical Research Methods

Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli

Markus W. Covert et al.

BIOINFORMATICS (2008)

Review Biochemical Research Methods

A Genecentric Human Protein Atlas for Expression Profiles Based on Antibodies

Lisa Berglund et al.

MOLECULAR & CELLULAR PROTEOMICS (2008)

Article Biotechnology & Applied Microbiology

Network-based prediction of human tissue-specific metabolism

Tomer Shlomi et al.

NATURE BIOTECHNOLOGY (2008)

Article Biochemical Research Methods

Dynamic analysis of integrated signaling, metabolic, and regulatory networks

Jong Min Lee et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Biochemical Research Methods

Context-specific metabolic networks are consistent with experiments

Scott A. Becker et al.

PLOS COMPUTATIONAL BIOLOGY (2008)

Article Multidisciplinary Sciences

Pivotal role for neuronal Toll-like receptors in ischemic brain injury and functional deficits

Sung-Chun Tang et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Multidisciplinary Sciences

Global reconstruction of the human metabolic network based on genomic and bibliomic data

Natalie C. Duarte et al.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)

Article Biochemical Research Methods

Matrix formalism to describe functional states of transcriptional regulatory systems

Erwin P. Gianchandani et al.

PLOS COMPUTATIONAL BIOLOGY (2006)

Review Biochemistry & Molecular Biology

TLR signaling

T Kawai et al.

CELL DEATH AND DIFFERENTIATION (2006)

Review Microbiology

Modulation of tumor necrosis factor by microbial pathogens

Masmudur M. Rahman et al.

PLOS PATHOGENS (2006)

Article Multidisciplinary Sciences

A toll-like receptor that prevents infection by uropathogenic bacteria

DK Zhang et al.

SCIENCE (2004)

Article Biotechnology & Applied Microbiology

Bioconductor: open software development for computational biology and bioinformatics

RC Gentleman et al.

GENOME BIOLOGY (2004)

Article Biochemistry & Molecular Biology

Nod2, a Nod1/Apaf-1 family member that is restricted to monocytes and activates NF-κB

Y Ogura et al.

JOURNAL OF BIOLOGICAL CHEMISTRY (2001)

Review Cell Biology

LPS induction of gene expression in human monocytes

M Guha et al.

CELLULAR SIGNALLING (2001)