相关参考文献
注意:仅列出部分参考文献,下载原文获取全部文献信息。Quality control and preprocessing of metagenomic datasets
Robert Schmieder et al.
BIOINFORMATICS (2011)
Enterotypes of the human gut microbiome
Manimozhiyan Arumugam et al.
NATURE (2011)
Stalking the Fourth Domain in Metagenomic Data: Searching for, Discovering, and Interpreting Novel, Deep Branches in Marker Gene Phylogenetic Trees
Dongying Wu et al.
PLOS ONE (2011)
Evaluating the Fidelity of De Novo Short Read Metagenomic Assembly Using Simulated Data
Miguel Pignatelli et al.
PLOS ONE (2011)
SmashCommunity: a metagenomic annotation and analysis tool
Manimozhiyan Arumugam et al.
BIOINFORMATICS (2010)
METAREP: JCVI metagenomics reports-an open source tool for high-performance comparative metagenomics
Johannes Goll et al.
BIOINFORMATICS (2010)
SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
Murray P. Cox et al.
BMC BIOINFORMATICS (2010)
De novo assembly of human genomes with massively parallel short read sequencing
Ruiqiang Li et al.
GENOME RESEARCH (2010)
Assembly algorithms for next-generation sequencing data
Jason R. Miller et al.
GENOMICS (2010)
A human gut microbial gene catalogue established by metagenomic sequencing
Junjie Qin et al.
NATURE (2010)
eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations
J. Muller et al.
NUCLEIC ACIDS RESEARCH (2010)
The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
Peter J. A. Cock et al.
NUCLEIC ACIDS RESEARCH (2010)
Ab initio gene identification in metagenomic sequences
Wenhan Zhu et al.
NUCLEIC ACIDS RESEARCH (2010)
Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
Jeremy Goecks et al.
GENOME BIOLOGY (2010)
SOAP2: an improved ultrafast tool for short read alignment
Ruiqiang Li et al.
BIOINFORMATICS (2009)
The NIH Human Microbiome Project
Jane Peterson et al.
GENOME RESEARCH (2009)
Discovering Functional Novelty in Metagenomes: Examples from Light-Mediated Processes
Amoolya H. Singh et al.
JOURNAL OF BACTERIOLOGY (2009)
A core gut microbiome in obese and lean twins
Peter J. Turnbaugh et al.
NATURE (2009)
Quantifying environmental adaptation of metabolic pathways in metagenomics
Tara A. Gianoulis et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2009)
The GAAS Metagenomic Tool and Its Estimations of Viral and Microbial Average Genome Size in Four Major Biomes
Florent E. Angly et al.
PLOS COMPUTATIONAL BIOLOGY (2009)
Assembly of viral metagenomes from Yellowstone hot springs
Thomas Schoenfeld et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2008)
Aggressive assembly of pyrosequencing reads with mates
Jason R. Miller et al.
BIOINFORMATICS (2008)
The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes
F. Meyer et al.
BMC BIOINFORMATICS (2008)
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
Daniel R. Zerbino et al.
GENOME RESEARCH (2008)
Systems microbiology - Timeline - Molecular eco-systems biology: towards an understanding of community function
Jeroen Raes et al.
NATURE REVIEWS MICROBIOLOGY (2008)
MetaSim-A Sequencing Simulator for Genomics and Metagenomics
Daniel C. Richter et al.
PLOS ONE (2008)
Environmental genomics reveals a single-species ecosystem deep within earth
Dylan Chivian et al.
SCIENCE (2008)
IMG/M: a data management and analysis system for metagenomes
Victor M. Markowitz et al.
NUCLEIC ACIDS RESEARCH (2008)
Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes
Ken Kurokawa et al.
DNA RESEARCH (2007)
Quantitative assessment of protein function prediction from metagenomics shotgun sequences
E. D. Harrington et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2007)
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods
Konstantinos Mavromatis et al.
NATURE METHODS (2007)
Assembling millions of short DNA sequences using SSAKE
Rene L. Warren et al.
BIOINFORMATICS (2007)
The marine viromes of four oceanic regions
Florent E. Angly et al.
PLOS BIOLOGY (2006)
Metagenomic analysis of two enhanced biological phosphorus removal (EBPR) sludge communities
Hector Garcia Martin et al.
NATURE BIOTECHNOLOGY (2006)
Metagenomic analysis of the human distal gut microbiome
Steven R. Gill et al.
SCIENCE (2006)
Environmental whole-genome amplification to access microbial populations in contaminated sediments
Carl B. Abulencia et al.
APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2006)
Using pyrosequencing to shed light on deep mine microbial ecology
Robert A. Edwards et al.
BMC GENOMICS (2006)
Comparative metagenomics of microbial communities
SG Tringe et al.
SCIENCE (2005)
Environmental genome shotgun sequencing of the Sargasso Sea
JC Venter et al.
SCIENCE (2004)
Community structure and metabolism through reconstruction of microbial genomes from the environment
GW Tyson et al.
NATURE (2004)
Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes
S Aparicio et al.
SCIENCE (2002)
DNA sequence quality trimming and vector removal
HH Chou et al.
BIOINFORMATICS (2001)
Initial sequencing and analysis of the human genome
ES Lander et al.
NATURE (2001)
A whole-genome assembly of Drosophila
EW Myers et al.
SCIENCE (2000)