相关参考文献
注意：仅列出部分参考文献，下载原文获取全部文献信息。PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions
Jaime Huerta-Cepas et al.
NUCLEIC ACIDS RESEARCH (2011)
MSOAR 2.0: Incorporating tandem duplications into ortholog assignment based on genome rearrangement
Guanqun Shi et al.
BMC BIOINFORMATICS (2010)
EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates
Albert J. Vilella et al.
GENOME RESEARCH (2009)
Reconciliation with Non-Binary Species Trees
Benjamin Vernot et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2008)
CLUSTERING OF MAIN ORTHOLOGS FOR MULTIPLE GENOMES
ZHENG FU et al.
Journal of Bioinformatics and Computational Biology (2008)
ORTHOFOCUS: PROGRAM FOR IDENTIFICATION OF ORTHOLOGS IN MULTIPLE GENOMES IN FAMILY-FOCUSED STUDIES
ALEXANDER E. IVLIEV et al.
Journal of Bioinformatics and Computational Biology (2008)
MSOAR: A high-throughput ortholog assignment system based on genome rearrangement
Zheng Fu et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2007)
PAML 4: Phylogenetic analysis by maximum likelihood
Ziheng Yang
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Rearrangement rate following the whole-genome duplication in teleosts
Marie Semon et al.
MOLECULAR BIOLOGY AND EVOLUTION (2007)
Ortholog clustering on a multipartite graph
Akshay Vashist et al.
IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS (2007)
A roadmap of tandemly arrayed genes in the genomes of human, mouse, and rat
Valia Shoja et al.
MOLECULAR BIOLOGY AND EVOLUTION (2006)
Phylogenetic reconstruction of orthology, paralogy, and conserved synteny for dog and human
Leo Goodstadt et al.
PLOS COMPUTATIONAL BIOLOGY (2006)
Roundup: a multi-genome repository of orthologs and evolutionary distances
Todd F. DeLuca et al.
BIOINFORMATICS (2006)
Automatic clustering of orthologs and inparalogs shared by multiple proteomes
Andrey Alexeyenko et al.
BIOINFORMATICS (2006)
A hybrid micro-macroevolutionary approach to gene tree reconstruction
D Durand et al.
JOURNAL OF COMPUTATIONAL BIOLOGY (2006)
Database resources of the national center for biotechnology information
David L. Wheeler et al.
NUCLEIC ACIDS RESEARCH (2006)
TreeFam: a curated database of phylogenetic trees of animal gene families
Heng Li et al.
NUCLEIC ACIDS RESEARCH (2006)
Syntons, metabolons and interactons: an exact graph-theoretical approach for exploring neighbourhood between genomic and functional data
F Boyer et al.
BIOINFORMATICS (2005)
Multi-alignment of orthologous genome regions in five species provides new insights into the evolutionary make-up of mammalian genomes
ZH Jiang et al.
CHROMOSOME RESEARCH (2005)
The Hungarian Method for the assignment problem
HW Kuhn
NAVAL RESEARCH LOGISTICS (2005)
Evolution's cauldron: Duplication, deletion, and rearrangement in the mouse and human genomes
WJ Kent et al.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2003)
OrthoMCL: Identification of ortholog groups for eukaryotic genomes
L Li et al.
GENOME RESEARCH (2003)
Genome Rearrangements in mammalian evolution: Lessons from human and mouse genomes
P Pevzner et al.
GENOME RESEARCH (2003)
An efficient algorithm for large-scale detection of protein families
AJ Enright et al.
NUCLEIC ACIDS RESEARCH (2002)
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons
M Remm et al.
JOURNAL OF MOLECULAR BIOLOGY (2001)
The COG database: new developments in phylogenetic classification of proteins from complete genomes
RL Tatusov et al.
NUCLEIC ACIDS RESEARCH (2001)
分享论文
